RNA id: XM_026944424.2


Basic Information

Item Value
RNA id XM_026944424.2
length 1978
RNA type mRNA
GC content 0.50
exon number 6
gene id chrna2b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7348155 ~ 7356914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTAGAATGGCAGTGGAAGAAAAGTTGCCCGGGAAACACTGAGTGCGCACATGGAGAGCTAAATGAAGCCGTATGATGGAGCGCGTTGGGAATCTCCTGGTCTCACTGAGGAGCGCTCTGCTCTGGAGCATCCTGTGGCAATCAATGTCCTGTTATGAGAAGACTCATTCACATGCTGAGGATGAACTCTTCAAGAAGCTTTTTGTCGGATACAACAAGTGGTCACGGCCTGTGCCAAACACATCAGACGTGGTCATCGTTAAGTTTGGCTTGTCCATCGCCCAGCTCATTGATGTGGATGAGAAAAATCAGATGATGACAACCAACGTCTGGTTGAAGCAGGAGTGGAATGACTATAAATTGCGTTGGAAGCCCTCTGATTATGACAATGTGACGTCCATCAGGGTGCCATCAGAGCTCATCTGGGTTCCAGACATTGTGCTGTACAACAATGCAGATGGGGAGTTCGCTGTGACCCACATGACCAAAGCTCACCTCTTCTATACAGGCAAAGTGCGCTGGGTTCCCCCTGCCATCTACAAAAGCTCCTGCAGCATTGATGTCACCTTTTTCCCCTTCGACCAGCAGAACTGCAAAATGAAGTTTGGCTCATGGACATATGACAAGGCCAAGATCGACTTGGAGCGCTTAGAGACCACTGTGGACCTCAAAGACTACTGGGAGAGTGGTGAATGGGCTATCGTCAATGCTGTGGGAACATACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCAGACATCACGTACTTCTTCATCATCCGACGCCTTCCTCTGTTCTACACCATCAACCTGATCATCCCATGtctgctgatctcctgcctGACTGTGCTGGTCTTCTACCTGCCGTCGGACTGTGGTGAGAAGATCACGCTGTGCATTTCTGTTCTCCTCTCGCTCACCGTCTTCCTGCTGCTCATCACAGAGATCATCCCTTCCACGTCATTGGTAATACCACTCATTGGCGAGTACCTGCTCTTCACCATGATCTTTGTCACGTTGTCCATTATCATCACCGTGTTTGTGCTGAACGTGCACCACCGCTCACCAGGCACGCATAAGATGCCAAGTTGGGTGCATACTATCTTCCTCGATATCATCCCACGTTGGCTGTTCATGCGCAGGCCGGCTCCCTATGGACGTCGTCGGCAGAGGTTACTGCTCCTGAAAAGTCGAAGGTCACGAGGACTTGGGGCTCCCACTGGATCATGTTTAAGCACTTCAGCCAGCTGGTTCAGGGAGGTGGCTGAGGATGAGGAAGCACACACACGATGCTTCTATGAAGACCTAGAGCTGGGCACGCTGTCTtctaatttctctctctccttccgcCCTCCTTCTCCTCGTCCACCCGGCTCCACCCCAACTCCTTCTCCTCCACTCCCTCCTCAtccttcttctctgtctttGAAACATGGACCTCCTATGAGACATGATGCACTGCTGGGTGCCAGGCATCCAGGGGGTAGAGTGAACCATACTATGCGGCAATCAGACAATGAGcggttctctctgtctcccagCATCATGCAGGCTCTGGAGGGAGTTCACTACATTGCGGATCATCTGAGAGCACAAGACGCCGACTTCAGTGTTAAAGAGGACTGGAAGtatgttgccatggtgattgATCGGATCTTCCTGTGGATGTTCATCATCGTTTGTCTGTTGGGTACCATCGGCCTGTTCCTTCCCCCATGGCTGGCTGGCATGATATAGAGCCACTTACATAAACTTGAAGACAAGCAGTACGGGTGCTGTGGAAATACTCGTCATTACAGACAGTGAGCGAGCCTGCCACGTGGATGAATAATATGGAAACTGtgcaaaaatatttgaatgaaGAGCAAGAAATTCATCATGGAGCAGAATGTCTGTCAGCACTGTGCAAGAGCCCAGAAAACAAATTTATCTTTCAATGTAAAGCCTTGCAATGAATACTGATGAATAAAA

Function

GO: NA

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345097 lncRNA upstream 86044 7261050 ~ 7262111 (+) True G291300
TU345070 lncRNA upstream 120928 7220306 ~ 7227227 (+) True G291274
TU344873 lncRNA upstream 289572 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 365351 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 408536 6939191 ~ 6939619 (+) True G291058
TU345188 lncRNA downstream 47514 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 132394 7489308 ~ 7520858 (+) True G291423
TU345246 lncRNA downstream 165010 7521924 ~ 7522123 (+) True G291434
XR_003404600.2 lncRNA downstream 253573 7610487 ~ 7614980 (+) True LOC113545343
TU345443 lncRNA downstream 308215 7665129 ~ 7666009 (+) True G291581
XM_026944605.2 mRNA upstream 3240 7339079 ~ 7344915 (+) True si:ch211-142k18.1
XM_034313432.1 mRNA upstream 72009 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA upstream 72009 7267406 ~ 7276146 (+) True nme6
XM_026944356.2 mRNA upstream 72009 7267406 ~ 7276146 (+) False nme6
XM_026944335.2 mRNA upstream 98333 7246172 ~ 7249822 (+) True atraid
XM_026944338.2 mRNA downstream 121368 7478282 ~ 7502438 (+) True rhoj
XM_026944346.2 mRNA downstream 266307 7623221 ~ 7629922 (+) False six4b
XM_026944345.2 mRNA downstream 266308 7623222 ~ 7629922 (+) True six4b
XM_026944579.2 mRNA downstream 279271 7636185 ~ 7639104 (+) True six1b
XM_026944474.2 mRNA downstream 367392 7724306 ~ 7767694 (+) True rtn1b
XR_004580167.1 other upstream 328469 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1546462 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2368755 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2369300 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 232454 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 526304 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 527731 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 530614 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 531095 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile