RNA id: XM_026944431.2


Basic Information

Item Value
RNA id XM_026944431.2
length 2398
RNA type mRNA
GC content 0.46
exon number 13
gene id evlb
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9426445 ~ 9463533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGTCCTCTCAGAGAGAgctctgttctttcttttttcttttttttatctactaATTTCTTCTTCTCTGGTGTGATATTCTGTCAGGATTGATTCAGTGAGGATGAGATTACTCATCATTTCCTTCTTACTAAGAACATCTTAGCATTTCATtacttcctttcatttttttcaatgcaAATTCCTTCCAAGGCCATTGTTCAGCCGAGTGTCTGctatgtgaatgtgtttgtgtgtgtgtgtgtgtgtgatggaaggTGAAGTGAGATCAGGCAGCTTGCTCTGCCCTTTGTGCAACTCCTGCTCGGATAAGATGCTGTTGCTCTTTCAGTCTTTGAACCGAATGCTACATTGAGTGGAGGAGGAGTCCAGCTTACAGCCCACTGAGCGATAGAACAAGTGAACGAGAGAATCTGTTCGTCTGCTATGACCCAAAACAATGGATATTAACCTGCAGTCACATCGCTTCTACTTCCCCCAGATCTACTGTGACGCCAACGCTCAGGTCATTGAGTATAAGCTCAGTGAACAGAGTATTTGCCAGGCCCGTGCCTCTGTAATGGTCTACGATGACACCAGCAAGAAGTGGGTGCCCATCAAACCAGGCCAACAAGGCTTCAGTCGCATCAACATCTACCACAACACTGCCAGCAACACCTTCCGTGTGGTGGGGGTCAAACTGCAGGATCAGCAGGTTGTCATTAACTACTCTATTGTAAAGGGGCTGAAGTATAATCAGGCCACTCCTACATTTCACCAGTGGCGTGATGCCAGGCAGGTGTATGGACTCAACTTTGCCAGTAAGGAGGAGGCCACCACCTTCTCCAACGCCATGCTGTTTGCCCTCAATGTGCTCAGTACCCAGGAGGCAGGTCCAGCAGTTCAGCGCCAGGTACAGAACGGCCCCACAGCGGAAGAACTGGAGGTGCAGAGAAGACAGATGGagatgcagcagcagcaacagcagcagcagcaaatgCAGGCACATATTGAGAGAGAGCGACGCTCATCCAACTCAGGCTCCCCATTTCAGGGACATCCCGCAGTGCTCTCGGTGGCACCTCCAAGCATAGTGCCACCCGTCATGTCAATTGGAAGCCCATgcccacctccacctcctcctcctgcacCTCCCGGGCCTCCTCCTCCAGCAGCAGGAGCCCCTCCTCCTCCACCGCCCTTACCTCTGGGTGGAGGTGGGTATGGaggtcatcatcatcatcatcacgagGATGCGCACGCACCCACCGGCCTCGCTGCCATGATCGCTGGGGCCAAACTGCGCCGAGTGCAGAGGCCTGACGAGAGTTCAGGAGCCAAAAACGATGCCAATCGGACGAGCGGAGGGAGTGGGGGCCTGATGGAGGAGATGAATGCCCTGCTGGCACGACGACGGAAAGCAGCAAACCAGTCAGAGAAAGATGGAGACTGCCAAAATGATGATGCAAATTCCTCTCCAATGTCTAGAGGACAGAACGCAGATGGTGCAAAGAAGCCATGGGATCGAGCTAACTCTGCAGAGAGATCATCACTGGTATCAAGAGTTCGACCTGTGGGCAGTAGCAGTGACACAGACGCCTTAGACTTGGATAGAATGAAACAAGAAATCTTGGAAGAAGTTGTTCGTGAATTGCACAAGGTGAAAGATGAAATCATTGATGCCATTAGACATGAACTTAGTAGAATTAGCACGACATAATCTCCCAGCCTCATGTGACCCCTCTTTTATGAGCCCTGACCCCTGGCAGGAACCGCTGTAGCTGAAGAGGGGACGACACCCAGCAACGTTACCGCCATGTTAAAGCAAATGTATTAGTTTGCTCTAACATGTAGTCTACCTTGTGGTACCCCTCAGATACAAAACCGGATGGAAGACACTTGCACTGACCTCTCTGTTTTCtggtttaaatttatatttggcAATGACCTTTTCAAGTCTTTAATGTCTTTATAGGAGTTTGTTCTagatgtttttcctttttttggattgcttttattattattattattattattattattattattattattattggtagcAGTGTTTATTTAGGTGGTAGTAGGTATTTATTTagtgatttaataataataataataataataataataataacctgaaCATTGCCCATGTCCACATGTCAGCCTTTTATATTGTTTgacttttattttcctttgtgtTAAAAAGATTTGTTTCTCACCatgattttgtaaaaatgttttttaaactcCTTTTGGCAACACAGATGTGTAACCACTGACAGGAAGGTGGAACATGACACTGGGGGACAGGAGACAAACTTTCTTTTTGGATATTGCgatcttacaaaaaaaaaaaaaaaaacactacaccAGAGTATTTGTGATCATgttgttaataaaatgtttattggcTAAAA

Function

GO: NA

KEGG:

id description
K23487 EVL; Ena/VASP-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346709 lncRNA upstream 22363 9414551 ~ 9415576 (+) True G292643
TU346720 lncRNA upstream 29225 9408492 ~ 9408714 (+) True G292654
TU346095 lncRNA upstream 732695 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 852037 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 854462 8582950 ~ 8583477 (+) True G292072
TU346871 lncRNA downstream 90904 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 124167 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 148455 9611988 ~ 9612612 (+) True G292756
TU346860 lncRNA downstream 149892 9613425 ~ 9616591 (+) True G292754
TU347065 lncRNA downstream 404616 9868149 ~ 9868609 (+) True G292929
XM_026944652.2 mRNA upstream 13370 9419110 ~ 9424569 (+) True LOC113545338
XM_026944653.2 mRNA upstream 13370 9419110 ~ 9424569 (+) False LOC113545338
XM_026944654.2 mRNA upstream 13727 9419110 ~ 9424212 (+) False LOC113545338
XM_026944656.2 mRNA upstream 13727 9419110 ~ 9424212 (+) False LOC113545338
XM_034313813.1 mRNA upstream 25704 9389746 ~ 9412235 (+) False LOC113545286
XM_026944433.2 mRNA downstream 448 9463981 ~ 9474164 (+) True yy1b
XM_026944434.2 mRNA downstream 449 9463982 ~ 9474164 (+) False yy1b
XM_026944530.2 mRNA downstream 31712 9495245 ~ 9505126 (+) True entpd5b
XM_026944522.2 mRNA downstream 78875 9542408 ~ 9551941 (+) True LOC113545265
XM_026944524.2 mRNA downstream 78875 9542408 ~ 9551941 (+) False LOC113545265
XR_004580138.1 other upstream 277038 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 440943 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 546199 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 928456 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1363502 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 440217 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 695422 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1555383 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1680354 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1681406 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile