RNA id: XM_026944434.2


Basic Information

Item Value
RNA id XM_026944434.2
length 2339
RNA type mRNA
GC content 0.47
exon number 5
gene id yy1b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9463981 ~ 9474164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcCATCCGTCATAAATCTGCTGCCAGTGAGCGTTTTTCTCAAATCTCGCGAGATCTGAAACTGGAGTGGAGAAGCGACGTGATCTCATTGCGAGGCGAAGTGGAGTTATTTGTATTATCGAAGAGAAGAGGGAGGGCAGCTATCGTTTCTCTGagggggtgtgtgtttgtggggcAACGAGTgctgcgtgcgtgcgtgcgcgcgcgtgtatgtgtgtgtgtatatgtatatgtgtatgcaagcaagcaagcaagctgGCGGAATTCAACATGGCATCGGGCGAAACGCTGTATATCGAGACAGACGGCTCGGAGATGCCGGCTGAAATAGTGGAACTTCACGAAATAGAAGTGGAGACAATTCCGGTGGAAACGATCGAGACCACGGTGGTCGGGGGCGACGATGATGACGAACACCAGCCCATGATCGCGCTGCAGCCGCTCGTAACAGACGACCCGAGTCAGGTCCACCATCAGGAGGTGATCCTGGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGACGAGTCCGATCTGCGGACAGACGATGGGTTTGAGGACCAGATCCTCATCCCGGTGCCCGCGCCCGGGTCAGAGGAGGAGTACATCGGACAGACTCTGGTCACGGTAGCCGGGAAGAGTTCCGTGGGCCGGATGAAGAAGGGGGGAAGCGGTGGAAAGAAAGCGGGTAAAAAGACGTACCTGAGCGCTAGCGAAGCcactgggagaaaatgggagCAAAAACAGGTTCAGATAAAGACGCTGGAAGGCGAATTCTCCGTGACGATGTGGGCGTCGGATGATAAAAAGGACATTGACCATGAAACAGTGGTGGAGGAGCAGATTATTGGAGAGAACTCTCCTCCAGATTACTCTGAATACATGACTGGAAAAAAACTTCCTCCCGGCGGCATCCCGGGTATCGACCTCTCTGACCCCAAACAGCTTGCGGAATTTGccagAATGAAACCACGAAAGGTCAAAGAGGATGATGCACCCAGAACGATAGCCTGTCCACACAAAGGATGCACTAAGATGTTCAGGGATAACTCTGCAATGAGGAAGCACCTCCACACCCACGGGCCCCGGGTTCATGTGTGCGCGGAGTGCGGGAAAGCCTTTGTAGAGAGTTCAAAACTCAAGCGCCACCAACTTGTTCACACCGGAGAAAAACCTTTCCAGTGCACTTTTGAGGGCTGCGGGAAACGCTTCTCCCTGGACTTTAACCTCCGCACACATGTACGAATTCACACCGGAGACCGCCCATACGTCTGTCCTTTCGATGGCTGCAATAAAAAGTTTGCTCAGTCTACCAATCTCAAGTCGCACATCCTAACACATGCGAAAGCCAAAAACAACCAATGAGCAGCTCTGTTCTGCATTTTTCCTTTTACACCTGAATCCAGCCTCAACGTGACAGCATCTTAAAACACTGGAGGTATGAACTGTGCTCTTCTGTAGTTCTCCTAAGGAGTGCGGAAATGATGACCCAAAGGACTTGGGGTTTAATTACGGCATATTGTAAAAGGCACAAAGTGAAACATTGGGAACCCCTGTATTCTTGAATCAGCCCGCTAAGCGTGTGGCCCTTACTGAGGAGCAGAGCACGGCCGTGTCAGGCCCAGACGCCCGTCCCACTTTGTGATGGCTTACTGCAGCCAGCAGAATGATGGAACTCATGGACACTCATCTGTAGACATTGCTTTTTTCCACAGTAAGGAACAAGAACATTTTCGCAGTCCATTTCTGTTCACTATTACATAAATTTCACCAGTCTGCATAGATATAgcttttaattttgtatttttccaaGTGTGCATATTGTACACTTATTTTTGGAATGTACTTAGTAATGCAACCTTGTGATTTATTCTTTATCCCTGAGGATTTAAGGTTTTGCTTAGGGTGTGTTCTTGAAAGGGTTGATTATAGTTACTGTAAGACAATACTTCAAAAGTATTTTATGTAAAAagttatctttttttgtttcattttctctttggTTGTAATCTAACCATTGAATAATCTTGTATACGTGTATTGTATGGCTGTATGAAGATCATGTAGAAATGGACAGCTGTGTGATTTCAAGTGTTTACTGCTTTAAAGCATTCAGTCATCAGttgctttttcttttgtcaCATGGTCTCACATGGCAAAGAAACATTACTTCACTTTTAAACCCATATATTGAACCACATCTCACAATAAACCACAATGTGAGagttcatttttctttgtttgtaatGTATTGTAAAGGCCTAAATCATGAAATATTCTTTGTTAATAATTACATTGTCATGTATTTCAGTCtacaattaaaaacacaaatgtctcAGTGTT

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346709 lncRNA upstream 48406 9414551 ~ 9415576 (+) True G292643
TU346720 lncRNA upstream 55268 9408492 ~ 9408714 (+) True G292654
TU346095 lncRNA upstream 758738 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 878080 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 880505 8582950 ~ 8583477 (+) True G292072
TU346871 lncRNA downstream 80273 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 113536 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 137824 9611988 ~ 9612612 (+) True G292756
TU346860 lncRNA downstream 139261 9613425 ~ 9616591 (+) True G292754
TU347065 lncRNA downstream 393985 9868149 ~ 9868609 (+) True G292929
XM_026944432.2 mRNA upstream 449 9426445 ~ 9463533 (+) False evlb
XM_026944431.2 mRNA upstream 449 9437939 ~ 9463533 (+) True evlb
XM_026944653.2 mRNA upstream 39413 9419110 ~ 9424569 (+) False LOC113545338
XM_026944530.2 mRNA downstream 21081 9495245 ~ 9505126 (+) True entpd5b
XM_026944522.2 mRNA downstream 68244 9542408 ~ 9551941 (+) True LOC113545265
XM_026944524.2 mRNA downstream 68244 9542408 ~ 9551941 (+) False LOC113545265
XM_026944540.2 mRNA downstream 100187 9574351 ~ 9577558 (+) True LOC113545275
XM_026944520.2 mRNA downstream 144666 9618830 ~ 9624850 (+) False prpf39
XR_004580138.1 other upstream 303081 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 466986 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 572242 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 954499 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1389545 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 429586 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 684791 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1544752 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1669723 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1670775 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile