RNA id: XM_026944441.2


Basic Information

Item Value
RNA id XM_026944441.2
length 2814
RNA type mRNA
GC content 0.48
exon number 11
gene id ppat
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4101669 ~ 4115455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aCTTTACACAACTACATACCTGCTGTCGACGCCATTTCGGTTCCAAATCTGTTGTCCTGCAAAAAAACCAGAAGATTATCATCAACCACAGACACCACTGTACACAGTAGCTGAAGCTGAGCTTGTTCCTGCCGGCAGTGAGCTCGCGCTCTGAACGGAGCAGCACGCGAGGAAAGCGCGAGGAGGAAAACCGAGTTACGACACTTTATAAAAAACAGGCAGTGACGCCATCTTCACCACGTGGAAAAGTCTCGCGCGGTGCTCTGTGGAGAAGTGTTGCTCAATCAGATACTGTTTTAAAACTCTGCAGATTCTCCTGAAGAGATCTGCGATATCTACTGGGGAGTAGTGTGTTGCACATTTTAATccaccttttctttttcttctgactAGTCAGCTTTGTTTTGATGATTTGTACTGAACTGATATCGTACTTTGGCTTTTAGCGCTCAGAAGTGACTCTTCTAGCCGATTTGAACCCCCCCCCATTTCTGTAGTTGGTACCTTCCGGCATAAGCGGCTGCAGGAGGCAGCACGTGGTCGGACTGGGAGATTATCGGGCAGCGTGGGGAGTGAAGTTTTGTAGTTTTTTGTAGATTGTGAGGGGAGTTTGGAGTAGTGCTGGTCATGGAGTTTGAAGAATCCGGTATTGGAGAGGAATGTGGGGTTTTCGGCTGTGTTGCCGCGGGCGAGTGGCCAACCCAGCTGGAGGTGGCACAGATTATAACACTGGGGCTTGTAGCTTTGCAGCACAGGGGCCAAGAGAGTGCAGGCATTGTTACAAGTAATGGATCCAGTCCACCCACATACACCACCCTCAAGGGCATGGGGTTAGTGAGCACAGCTTTTAAACCAGAAGACTTGTTGAAGCTGCGATATGGTAACTTGGGGATTGGGCACACGCGCTATTCCACCACAGGaatgtcagagctgcagaaCTGCCAGCCCTTTGTGGTGGACACTCTGCATGGCAAGATTGCGGTGGCACACAACGGAGAACTTGTCAACGCTGCTGCACTGCGCAAAAAGGTGATGAGACATGGCGTGGGTCTTTCCACTAGTTCAGACAGCGAGCTCATCACTCAGCTGCTTTGTCTGACTCCGCCCATGGAGGAGGTCGACACTCCTGATTGGGTAGCACGCATTAAGAACTTGATGACAGAGACTCCAACGTCATACTCCCTGCTGATAATGCACAAAGATGTGATCTACGCTGTGCGAGACCCATACGGCAACAGACCTCTGTGTATCGGACGGCTGGTGCCCATCTCCAAACTACACAGCTCTGGAGGTGGAGAAGGAGACACAGAAGGCTGGGTTGTCTCCTCGGAGTCCTGCAGCTTCCAGTCCATTGGCGCCAAGTATTACCGTGAAGTCCAGCCTGGAGAAATAGTGCAGATCTCCAGACACGGGGTCAAGAGCCTGAACATAATCCCCCGTCCCGAGGGAGATCCTCCAGCCTTCTGTATATTTGAGTATGTCTACTTCGCCAGGCCAGACTCCATATTTGAAGGTCAGATGGTGTATACAGTCAGGCAGCGCTGTGGACGCCAGCTGGCCATTGAGGCCCCCACTGATGCAGATGTGGTCAGTACAGTGCCTGAGTCTGCTACTCCAGCTGCTTTAGGATACGCACAAGTGTCTGGCCTGCCCTACGTAGAGGTCCTGTGTAAAAACCGCTACGTCGGAAGGACGTTTATTCAACCAAACACTCGTTTGCGTCAGCTGGGGGTGGCTAAGAAATTTGGGGCGCTGACGGACAACTTTGCTGGCAAACGAGTAGTTCTCATTGACGATTCCATCGTGAGAGGCAACACCATCTCACCAATCATTAAACTGCTCAAAGAGGCAGGAGCAACAGAGGTCCACATTCGTGTGGCGTCTCCTCCGATTCGGTTCCCCTGCTACATGGGCATCAACATTCCTACCAAAGAAGAGCTTATTGCTAACAAACCAGAGTTCAAGGACATTGCTAACTACATTGGAGCCACCAGTGTGCGTTACCTGTCTGTCGAGGGCCTGGTGACTGCAGTTCAGAGTGGAATTGAGTCCTACGAGAAGGAGCAGATCAGCTCCAGCAGCAAGGCCATCAGAAAACTGGGTCATTGTACAGCCTGCCTGACTGGCAAATACCCCATTGAGCTGGAGTGGTGATGAAACACGCAGCAACACAACGGTTCACGTTGCACCTCATGAAAATTCAGCCTGTGACCATGCATTATAGGTAGATTAGGTCTACTATACTGGGAGGTATGAGAGGTAATAACGATTGCTGCATGCATTTAATTATAATGCTTTCAACTCTCTCAAGgacatttaaattcattcatccttTTGTATATTTTGACAGTAATTACTGTGATGTGGCATATACTTCAATGTTTAAGCACTTTTTTTGACCCTGAATTTTTCACCTTTTCTCTACTGAATGACTTTGGTTCACCTAGCTGCATGGTTTGAAGAGCTGTTCAACTCCTGAACAGTCTTGCTTCAGTGATTCATCCAAGTTATATGCAGAGCATTTACATCTAGACTGTTTAGATAGAAATACAAAGGTTAAGTGTAATGCTACACAAATAAGAGTAACTAATTAAAGTCATGAACCTGTACATGTGCCTTTCTTATGGCCACATAGCATTACGATATTGACAAATCTGAATGACATTCCTCAGTTTTCCGAGCTCATAAGAGACAACACTTTGTCCgtagtaaatgtgtgtgcgaAAACAGAACTGTTTTTGCTTGTTCCATTTCAACTGTGCAGCATAACCTGTTGAAATCCAGtgtaacttaaaaaaagaaaaagaatcaaCA

Function

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342961 lncRNA upstream 27703 4061818 ~ 4073966 (+) True G289530
TU342957 lncRNA upstream 27703 4062764 ~ 4073966 (+) False G289530
TU342967 lncRNA upstream 31302 4054457 ~ 4070367 (+) True G289531
TU342965 lncRNA upstream 31954 4054457 ~ 4069715 (+) False G289531
TU342971 lncRNA upstream 31954 4054457 ~ 4069715 (+) False G289531
XR_004580146.1 lncRNA downstream 123571 4239026 ~ 4243951 (+) True LOC117599777
TU343070 lncRNA downstream 133144 4248599 ~ 4279496 (+) False clocka
TU343078 lncRNA downstream 149928 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA downstream 204006 4319461 ~ 4330272 (+) True G289619
TU343090 lncRNA downstream 213393 4328848 ~ 4338299 (+) True trnad-guc_17
XM_026946956.2 mRNA upstream 56396 4024682 ~ 4045273 (+) True hook1
XM_026946957.2 mRNA upstream 56396 4024682 ~ 4045273 (+) False hook1
XM_034313865.1 mRNA upstream 56396 4024888 ~ 4045273 (+) False hook1
XM_034313866.1 mRNA upstream 56396 4024888 ~ 4045273 (+) False hook1
XM_026946977.2 mRNA upstream 85119 3991667 ~ 4016550 (+) True pfas
XM_026944445.2 mRNA downstream 8603 4124058 ~ 4137561 (+) True aasdh
XM_026944446.2 mRNA downstream 11846 4127301 ~ 4137561 (+) False aasdh
XM_034313506.1 mRNA downstream 61076 4176531 ~ 4196440 (+) False cep135
XM_034313504.1 mRNA downstream 61078 4176533 ~ 4196439 (+) True cep135
XM_026944620.2 mRNA downstream 61078 4176533 ~ 4196439 (+) False cep135
TU342966 other upstream 31954 4063635 ~ 4069715 (+) False G289531
trnad-guc_14 other upstream 113546 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 121884 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 733897 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 736267 3365278 ~ 3365402 (+) True LOC113546887
trnad-guc_16 other downstream 212016 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 213377 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 218103 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 222448 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 234353 4349808 ~ 4349879 (+) True trnad-guc_22

Expression Profile