RNA id: XM_026944446.2


Basic Information

Item Value
RNA id XM_026944446.2
length 4133
RNA type mRNA
GC content 0.45
exon number 12
gene id aasdh
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4124058 ~ 4137561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCCGATGCTCCTGGAAAGGAATTAGCATATGTTCTGCACACATCTGGAACAACAGGGCTTCCTAAAATAGTAAAAGTTCCACACAAGTGTATTGTGCCTAATATAGTACATCTCAGATGACCCCAGAGGATGTAGTGTTCCTCGCATCACCTTTAACCTTTGACCCTTCCGTGGTGGAGATGTTTTTGGCCCTGTCTTCTGGAGCTTGTCTTCTGATGGTTCCCTCCGCTGTGAGAAGGATGCCTGGCAGACTAGCCAATGTGTTGTTTAGACGAAACACCACCACCGTTTTACAGGCCACCCCGACTCTGCTGAGGCGCTTTGGGGGACGTGTCCTGCAGGAGGAGATACTCAGTGCAGGCTCCTCGTTGAGGGTGTTGGCTTTGGGAGGAGAGGTCTGTCCATCGCTGTTTGTCCTCAACAGCTGGAGACAAACGGGTAACAAGACGCGTATTTATAATCTCTACGGCACCACAGAAGTTTCTTGCTGGGCTTGTTGCCACAGACTGCCAGACAATCTCCTCTTCTCAGACCACATGGACAATGGATCTGTGCCTCTGGGGGAACCGCTCATGGACACTGCTGTGGAAGTGAGAGATGAGAATGGACGTCTGGTCACTGAAGGAGAGGGACAGGTCTTCAtagGCGGTCAGGAGAGAGTATGCTTACTAGACGGTGAGACGATGACTGCTGCCAAAGGAGTGATGCGTGCTACAGGGGACTGGGTGATGGTGCAGAACTCGCACCTCTATTACTTGGGTAGGAAGGACCGGCTGGTCAAAAGGCATGGTCAGATGCTACACCTGGATGCCTTACAACAGGCCATGGAACGCTTGCCTCAGGTAGAAGCTGGTGTGGTGGGTCTGCATGAGAACAGCAGATTGGTGGCTTTTGTGGTGCCCACAATTGACACAAGAACCGTGTCCTCTGAACACAGTGGCAACCAAGAACAGCATGTGCACAGCTCCACTAAGGACTCAGAAGACTCTCGTGTTTCCTCCAGAGCTCTAGAGATGGAAGTGCTACGAGGACTGTCTCAACTTGTGCCCAATCACAGCATTCCAGATACTGTATTATTGGTCCCTGCCCTGCCACTCACTAATCATGGTAAAGTGGCCATGGAGAAGCTGATGAGGTtgtatgagagacagagagaggttaGCGATAAGCACACCAGAATGGGAGACATGGAGACTGTGAGAGAAAGACTACAGGCACTATGGAAGgagTGTCTAGGTCTTTGTGATGATGGAGTTGTCACAGACGATGCACACTTCATGTTAAGTGGCGGGGATTCTCTACAAGCCCTGCGCCTCTTCGATTACATcactgttactatggaaacggcTTCTGCGGGTCTGCTGGAGGTCATTCTAGATGGCTCTTTTTCAGATGTCCTGAAACACATCACAGCAACCCACCAAAATCCTATCAAGACATCAGGCAAAAGACAAGCTGAAGATTCTGCATCTGTTGTTCCATCTAAGAGGTACCACACAGAAGTTGACTCAAACTTCGACCCTGAGGGGATTTTGCCACCTGTGGTGTCCTCAGAGAGAAGCAATATGAGATTTGTAGTTGTCCGTAGAGCTGGAGGTGTTGTATTTTGggattactttttaaaaagagagCAAAGACTTGTTACAAATTCAACAGGAGCCAGTGACAACATGGACAAGATACAAGAGAATTATCCAAGTGCAGAACcattatttataagcaaaccAAGTCAGCAGTGTAACGCAGGAAGTGGTGTTACTACACAATCAGGCATTACAAAAGACAGCCAACCCCTGGGCCTGCAGGTCTGTTGGAGTTCTGACACGGGCAGATGTGTGGACGCTTCACCAGTGTTGCTGATAGGTCCTGAGCGAGCCACTGTGTTTATTGGCTCTCACTCGCACAGACTGCAGGCTCTGGACCTGAGCAGCGGAGAGGTGGTGTGGGAGCGTGTGCTTGGGGACCGACTGGAATCTTCTGCTGCGGTTTCTAAATGTGGAACCCTGGTGGCATTAGGGTGTTATGATGGGCAGGTGTATTTTCTGAGTGTGGCCTCGGGGGAGACGTGCTGGGTGTTTAAGACAGGAGATGCAGTGAAGAGTTCTCCTGTTGTAGACCCTCAGACTGGACTGGTTATCATCGGTTCCCACGACGGACATGTCTACGCGTTAGAACCACTGgtgaagCGTTGTGTGTGGACATACTATTGTGGAGGTGGTGCGGTGTTTTCTTCCCCCTGTGTCCACTCCTCTCCCAGGCGGCTATACTCAGCCACACTACGAGGGCAGCTCCATTGCCTCAGTCCGgaCAGCGGTAAAGTCTTGTGGACGCATTGCACTGATGTtccatttttctcttctccttcctGTTCCGACTCCTGTGTCTGCATTGGTTCAGTGAATGGACAGATCAGTGCATTAAGCCATGATGGACATATGTTATGGAATTTTCTCACCGATGGACCTGTCTTCTCATCGCCATGCCTGGCCTCATTACCACCTTCAACCAATCAGAGAACCAGAGCTGGAGCATACGATGGTTGCACGACATTATCTCCAGCTTATCAAGCTGTTTTTTGTGGGTCACATGATTGCTCCGTATATTGTATCAATTCTGCTGATGGATCCTTACTATGGCGCTTCCAAACCACAGGCAAGGTGTATTCCAGTCCTTTTGTTTTTGATGGTGCTCCCTGGGGCATAAGAACCCTGGTAGCCGTAGCTTCAACGGATGGAACACTGTGGGTACTTGATGGAGAACAGGGAACACTCAAAGCCTCTTTCTTCTTACCTGGAGAGCTCTTCTCCTCTCCTATCGTGTGGGGTCACACTATAGTCGTGGGATGTCGGAATGACTATGTGTACTGCTTGGAACTGACTAGCAGGAAGGAATAACTAAAGCAACTCTCAGTACAATATGTAAAATGTTCCTACTGGTTAAATGTGTAGATGGCCATGTAACGTATGTAAAACTCTCTAGAATAATAGCAGCACTTTAGCACTATGTACTCGTATTAAATTGTACAGatgttaatatataatttatattatataacatctgtctttaatgtttttttttctacagaattCATAACATTGGTATTATTTAAGAATCTTCTCATGAGTACCTTTTGTAAATGGAAcagaaaaaagtgcaaataccaacaaactgcttttatttcaatGTTACATACAACACTGGTTTGACGCTACACGTTTGCACAcaatcaaattaaaaacaaagcgACGGAACTCAGGGATCTTCAAAGGAACACAGTGCAGTTCAGTCCACGTCTGTACATAAATAcctacatacattacatacatacatacaaaatattacGGTAAGTAGAGGGGGTTGGTGTTTTGCTGGGAGATCAAGGCTTTCTATGAGTTCGAAGCTGTTGTTATTTCAGAGAATAATGTCCTTTCCTCTGCAAAGTCATTATTTAGTCTTCCCCcggcaggattttttttaaagcactgatCTCCCACTGACTTGCTTTTAATGTCTGATACAAGAAGAGCTAGGACAAGCTACAGGATAATAGTGTTTCTATTACAGCAAGCAAGCAGTCTGTGTTCCAGAGAAATATTTCCAAAGAAACTGGAGGGCATAAACACTGTGCAAGAAGCAAATAGTTCATTAAcatttggttaatggtttccagTGAAATGATTTAACATGGTGGTTGAACAGAAGTGTCATTAATAACATTTACTATGTAAGTTATTTACATAAGTAAACACAGTGACTGTCATCATTATGTTAATTTTCAGTGACAGCTTAAATGACAGCAGTCATTTGTCACACAGTGAAAATCTTGGCCAAGATATCAAATAGGTTAATAGTCACAAAGAAAATGAGAATTAACCTTGTCCATATTAGACAAGGGGTGTTAAGACAatttaacaaatacatttttgaaatgTCAGGACTGGAATctagacttaaaaaaaaaaaaatacaaaaacagtagCCAGTTCTGAAGTTCATGCTTGTAATACATATCAGGGGGTGAAGTAGGATGTTTGTTATGGTGACACCTACTGTGCAACTTTAGCCCTTGAGTGAGTTCTTAAAAGACTCCCCAAAGAATTTATCACAAACTGTTAAAGAAGATGTGACTC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0016878 acid-thiol ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342961 lncRNA upstream 53335 4061818 ~ 4073966 (+) True G289530
TU342957 lncRNA upstream 53335 4062764 ~ 4073966 (+) False G289530
TU342967 lncRNA upstream 56934 4054457 ~ 4070367 (+) True G289531
TU342965 lncRNA upstream 57586 4054457 ~ 4069715 (+) False G289531
TU342971 lncRNA upstream 57586 4054457 ~ 4069715 (+) False G289531
XR_004580146.1 lncRNA downstream 101465 4239026 ~ 4243951 (+) True LOC117599777
TU343070 lncRNA downstream 111038 4248599 ~ 4279496 (+) False clocka
TU343078 lncRNA downstream 127822 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA downstream 181900 4319461 ~ 4330272 (+) True G289619
TU343090 lncRNA downstream 191287 4328848 ~ 4338299 (+) True trnad-guc_17
XM_026944441.2 mRNA upstream 11846 4101669 ~ 4115455 (+) True ppat
XM_026946956.2 mRNA upstream 82028 4024682 ~ 4045273 (+) True hook1
XM_034313506.1 mRNA downstream 38970 4176531 ~ 4196440 (+) False cep135
XM_034313504.1 mRNA downstream 38972 4176533 ~ 4196439 (+) True cep135
XM_026944620.2 mRNA downstream 38972 4176533 ~ 4196439 (+) False cep135
XM_026944619.2 mRNA downstream 38973 4176534 ~ 4196438 (+) False cep135
XM_034313840.1 mRNA downstream 98266 4235827 ~ 4238921 (+) True nmu
TU342966 other upstream 57586 4063635 ~ 4069715 (+) False G289531
trnad-guc_14 other upstream 139178 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 147516 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 759529 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 761899 3365278 ~ 3365402 (+) True LOC113546887
trnad-guc_16 other downstream 189910 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 191271 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 195997 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 200342 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 212247 4349808 ~ 4349879 (+) True trnad-guc_22

Expression Profile