RNA id: XM_034313725.1


Basic Information

Item Value
RNA id XM_034313725.1
length 4720
RNA type mRNA
GC content 0.50
exon number 15
gene id ppp1r13bb
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7785422 ~ 7832026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCTGTTCGCTGCTCAGCGGTTTCGGCTGTAATCACGGATTGGCTGCGCGTGCCCGCTCTCCTCAGCCTGCAGGCTTTAAACGCACGTTTCACAGACTTCGGAGGAGATTATACCATGGAATTTAAACACGTGGAGGCGGTGCAGGAGTTTACAGACTGGGGACAATGCGGTAGAATAAAAGTGTGCTCTTGCAAAATAACATGGGGGAACTCTTTTCAGGTGGCAAACCCTCGCGTGGAGCTCACTCTCTCTGAGTTGCAGGAGATGGCCAcgcggcagcagcagcagatcgAGGCCCAACAGCAGATCCTCGTCGCTAAGGAGCAGCGCTTGCGGTATCTGAAGCAGCAGGAGCGGAGGCAGCAGCAAGCCGTGTCTGAAACAGAGAAGCTGCAGAGGCTGAAAGAAAGAGTGGAAAGCCAAGAAGCCAAACTCAAAAAGATTCGTGCCATGAGGGGCCAAGTTGACTACAGCAAGGTCATCAATGGCAACCTGTCTGCAGAGATTGAGCACATCAGCGGACTGTTCCAGGAGAAGCAGGCAGAGCTTCAAGCAGCCGTGCTCAGAGTAGACCAGCTGAGTCAGCAGCTGGAGGAGTTGCGCAGAGGCAGACTCAACGGCCTGCAGGGCCTCGGGGGTCATGTCACCGGCACTGCTGCACTGGAGCTCCGCAAGCTGTACCAAGAGCTCCAGATCCGTAACAAGCTGAACCAAGAGCAGAACAGTAAGCTACAGCAACAGAAGGAGCTGCTGAACAAGCGCAACATGGAGGTGACGCTGATGGACAAGCGCATCAGCGAGCTCCGCGAACGCCTCTATAAGAAAAAAGCTGAGGCACGTCAAAAAGAGAACTTGCCTCTGAACCATGCAAATGGACCTCCTTCACCCCAGCCAACTGCAGGCAATACAGGTCGTGTGGCTGCAGTAGGGCCATATATCCAGGTCCCGGTGCCATCACGCCCAGAGAACAACTACATGGTTCCACCAGATCCTCTTAAACCTCAGACACTGGGCATGAACACTCCAGCCACCCATGCTCGATCTAAATCAGATGGCGTGAGAAAGCCACCTGGCCCGTGGAAGGTCTCTGATTTAGACATCATAGTGGACCCATTCCCACCGTCTCCTCCGGAGTCTGGCCCGGGCCCCGGGGTCTCCGGCACCTCCTGCTCCACAGAGGGGTCAGACGGAGTGTCTTCTAATGATGCAGGGTGGCCCACCCTCAGCAAGGGCAACACATCTCTGAAGCCTCCAGACTGGAAAGAATCAGTAGGAGACATTCCCAGCAAAACAGCGTCTCCTGCTGGCACCCCATCAGATAAGGTTCAGGACATGAGTAAACTGGGCCCAGCTCCACCTCCTCCCTGTAAGCCCCAGCCTCCTCCATACGGCACCCACACCAGAGCCCATCCACTTTCGTCCATCAATTCTGGCTCCACTGGCTCCCTGGACCGGCGTAAAGATGTGCCACTGTGTCCTGTCCCAACCCACCCAAGCAACCCCCCTAATCCCAATGCTCCACCTCCACCTGCCTGGCCACGTGGTGGCTCGTCCACTGGCTCCTCTTCCCAGCAGATCCAGCAGCGCATCTCAGTCCCTCCCAGTCCCACCTTCCAGCCCAGCTCTCCTCTTTTTCCCCCAGGAGAGAGGTCTGACCCCCCTCTGGCTGTGGCAGTGCGCCCTTTTATCCCAGACAGGGGTTCCAGGCCACAGTCACCTAGAAAAGGCCCAGCCACTATGAACTCAAGCTCCATTTATCACATGTACTTACAGCAAGGTGTGCCCAAGAATTACCCTCTTGGCAAGTCTGCCGTCAAAGCAGTGTATGGAAAGCCGGTCCTGCCCTCAAGCTCTACTCCCACCTCTCCCCTGCCCTTCCCGGGCTCTGGATCTTACCCTGTGCTACCAGGCACTGTAGGCGATGTGGTAGATGGTGATCTGGAGAGTGAAGGTCAGACACCTGGTTTCCCAGAATCCCCTGCACCCAGCGTGGACCACATTCCTCGGCCCCTCAGTCCCACCAAGCTTACACCCATGGTTCACTCACCCATGCGTTTTCAGAGTGATGCTGAACTCGAGGCCCTGCGCAGGAAGCTGGCCAATGCGCCACGGCCACTCAAGAAGCGCAGCTCCATCACAGAGCCTGAGGGACCCAGTGGGCCGAACATCCAGAAGCTCCTCTACCAGCGCTTTAACACTCTAGCTGGTGGAATCGAAGGAGGCATTGGCGGAGTGGGAGGAGGCAGTGGAGTCACTCCCTTCTACCAGCCAACAGGAACAACAGTGGGAGAGGCACTGGCCGATGCAGACAATGGGAACGCGTCTTCTGAAACACCAGCTTTGACTCTCGTTGGCACAGAGGAAGTGCCCTCGCAAGACTTACCCCAGGGTGATGCCAATGATAACCAGCCAGTGCAGCCAGCCAGCGAAACAGCAGTACCAACAGCACTGGAGCCGTCAGaagacaacaacaataacatccCAGCAGGACCCGTGACCACTCTACCTAGCCCTGTGCCTGAAGCCAGCTCACCGCAGGAGGCAGGAAGCTCTCCGTCCGCTCAAGCTACGGAGAAGCGCACTAACCTAAAGAAACCTGACTCAGAGAGGACAGGCCATGGCTTCAGGGTGAAGTTCAATCCACTGGCCCTGCTGCTGGACGCCTCACTTGAGGGCGAGTTTGACCTGGTGCAGCGGATCATCTATGAGGTGGAGAACCCCAGCACCCCAAACGATGAGGGCATCACACCCTTACACAACGCAGTGTGTGCCGGACACCATCACATTGTCAAGTTCCTGCTTGACTTTGGAGTCAATGTCAATGCAGCAGATAGTGATGGCTGGACGCCCCTGCACTGTGCCGCCTCCTGCAACAGCGTTCACCTCTGCAAGCTGCTGGTGGAGTCCGGTGCCGCCATCTTTGCCACCACCATCAGTGATGTGGAAACAGCAGCAGACAAGTgtgaggagatggaggaggggTATATTCAGTGCTCGCAGTTCCTCTATGGTGTGCAAGAGAAGCTGGGAGTGATGAATAAAGGAATTGTGTACACTTTGTGGGACTATGAGGCTCAAAGTGCAGACGAGCTGTCGTTCCAGGAGGGAGATGCCATCACTATTCTGCGCAGGAAAGATGATACTGAGACAGAGTGGTGGTGGGCCAAACTTAATGACAAGGAGGGCTATGTACCTCGCAACCTGCTTGGGTTGTACCCCAGAATAAAACCACGTCAGAGATCCCTGGCATAGCTGACTGCCCCTTTCCCATCTGACTGATTGGACTGATGTCTGGGGGTGTAGGACCTCCATTATTCACCCCCAATCTTTGCTGATCCAGTTCCTGCAGGGCTAAAGCTGCTAAACCATGCCTTCTCATTTGGGGGCACAATagacaaacacatacaaacacacacacaaatacaagtTAAACAAGAAGCCTCAGGTCCTAAGGTCTGCCCCATTACTCCAATATCTAGCATTTCTTCCTCACATTCCTCTACCCTTCAAGACTTGGTTTCTACCTTATGACATGTATCATAGTCGCTACACATTTCTCCACCTCTATCAAGGCACTACTTACTAGGGTTTATAGCTTTTGTTTTATATCATTGTATAGCTTGTGTTTCTATCTGAAGCTTTCGAATGCTATTATTTTATTGACAGTATGCTGGCACAGGGCTCAGTCAGAGCATGGCTGCTTTTGCTTCCTACCAAGCTTTCATTCAACAAGGAAATCTTTACACTGAAGATAGCATCCTTTAGGGTTGTGGgttatgtgtgtatttacactACATTCATATGAGTTAAGAACAAAAGAATGCTCTCTGAGTGAATGAAATTTCATAGTGTATAAAAATGAgcagtgaaagtgaaatgtATGTTGAGGTGTGTGAGAACAGAAATGGTTACATGGGTTATATGAGAAGAGAACAAATGCTTTACaaattatgtataatgtatagtaACTGGGCCAACATATTGCAAAGTATCTGGTTCATATAATATGTACATTTAAGCAAGGGTATTTGTACGTGTCAGATACAGTGTTATCTGTATGAGTGGTTGGTTGCCTCTCTACTatgagtgatgagtgtgtgaaataaGTGTGCATGGTTGGGTTGTTGAGAGATTTTCACGATGGACAGCACATGagaattattttaaagattacATATGGAGATAGCATAGcatatgaatgtgtgaatgagagtgtgtgattgcaAGAAACTGAACTGGTGTTGCAGTACAATGAACAGTAACTAAACTGGCAGTACAAAATgaacaatacacttttctatGATTTTAGTAGAATACAGTTTTGCCCAAAGACACTAAAATGGTTTGAAGCCTTTGAAACATTTCTTAGTTTTTCCTCCACTAGCTAAGATATGAACTGAATGcatatttacattgttttacactgtattgttgttttgttttgtttttttaacattgaatTACATTGTGCCACTCCATTTCCATCCCACTCCTCTTGAAAGTATTGTGAGTTGATCTTTTACGCCCTGCCTCTGAGGCAGTAATGAGCTTTACCATAGAGTTCACCTGTAAATACTGTGATGAAGCTCTAAAATGATTTGTGCTATGTTCAGTACTTGCCTGTGCAGACCTCTGTATGACATACAGATACAAACACTCGGACCATCTGTTCTCTACATGTGcacaaataaacattaaacaaatccCAGTAAGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345535 lncRNA upstream 31611 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 145814 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 147610 7665129 ~ 7666009 (+) True G291581
XR_003404600.2 lncRNA upstream 198639 7610487 ~ 7614980 (+) True LOC113545343
TU345246 lncRNA upstream 291496 7521924 ~ 7522123 (+) True G291434
TU345543 lncRNA downstream 1304 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA downstream 1304 7833330 ~ 7837080 (+) True G291644
XR_004580121.1 lncRNA downstream 113926 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 293995 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 477216 8309242 ~ 8321459 (+) True G291907
XM_026944390.2 mRNA upstream 31622 7777597 ~ 7781997 (+) True atp5mpl
XM_026944647.2 mRNA upstream 37258 7774492 ~ 7776361 (+) True rd3l
XM_026944474.2 mRNA upstream 45925 7724306 ~ 7767694 (+) True rtn1b
XM_026944475.2 mRNA upstream 46915 7756896 ~ 7766704 (+) False rtn1b
XM_026944579.2 mRNA upstream 174515 7636185 ~ 7639104 (+) True six1b
XM_026944508.2 mRNA downstream 53767 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA downstream 53767 7885793 ~ 7945812 (+) False brf1b
XM_026944614.2 mRNA downstream 211360 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 256661 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 256661 8088687 ~ 8125663 (+) False jag2b
trnac-gca_25 other upstream 224180 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 793933 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 2011926 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2834219 4941952 ~ 4979400 (+) False dnm3a
XR_004580100.1 other upstream 2839558 4941951 ~ 4974061 (+) False dnm3a
trnaa-cgc_5 other downstream 51192 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 52619 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 55502 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 55983 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 56739 7888765 ~ 7888836 (+) True trnaa-cgc_7

Expression Profile