RNA id: XM_026944472.2


Basic Information

Item Value
RNA id XM_026944472.2
length 2039
RNA type mRNA
GC content 0.49
exon number 12
gene id eif5
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6884303 ~ 6893353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGAATGAACCAATGGCGTTAGCCCATAGTGACGGGGGCGGGGTTAAATACCCAACTTAACATTCGGAAGCACGCTGCTATAGAAACTGACTTGGGAGACGCGGTGTGTAGAGatCCCCGGGTTTGAGGGCGTCTCAGAGTTTGTTTTCGGGCTTCATCCCTCTGCATTGTAAGGCTTGCTCCAGGCTCTGTGCTCTGCACTGTTCTGTGTAACGCAGTGCTGCATACAGTCCAACTGCTCATCCAAACACTTCATTCATCTCAGGGAGACCAGCGGTGTGTTTATGTCTTTGCTTTACGAAAACGCAGACTATTCGGACGTCAGGAGCTGCGGATGGGAAAGAGCTGTTGGACAGCTGTTGAAACCTGCGTGGGGGGAACTTAGTCTACGAGCTTGCCCCTTGGAGCCTCAGTGGCCAAACCATTTTCATGTCAGAGACAGAGTCTTCTTGCAGTCGTTTATGTCATCCTTTCCTTTCTGGACAGAGAATACGAAAAATTGCCAATTCAAGATCTTGTCTTGCTGATAAACCCTATAGTAAGCCAGAATGTCTGTCAACGTCAACCGCAGCGTCACGGACCAGTTTTATCGGTACAAGATGCCTCGTTTGATTGCTAAGGTGGAAGGCAAGGGAAATGGTATCAAGACTGTTATAGTCAACATGGTTGATGTTGCCAAGGCACTGAACAGGCCTCCTACTTATCCAACCAAGTTCTTCGGCTGTGAGCTGGGAGCCCAAACCCAGTTTGATACAAAGAACGACCGCTACATTGTCAACGGGTCTCATGAGGCAAACAAACTGCAAGACATGCTGGATGGATTCATTCGCAAGTTTGTGCTGTGTCCAGAGTGTGACAATCCTGAGACCGATTTGCACATCAACGCCAAGAAGCAGACCATAGGAAACTCCTGCAAGGCCTGTGGATACCGAGGCATGCTGGACACCAGACACAAACTCTGTACCTTCATTCTCAAAAATCCACCTGAGAATGAGAGTGGATATGtcaagaaggaaaaagagaagaagaaccgcaaaaaagacaaagagaatgGCTCAAGCAGTGGGGAGGCTGGAAACCGTAAGGACATAGATGCCCCTGATGCTGTGGacggagatgatgatgatgaagattggGCTGAAGAGACCACGGAGGAGGCGCAGCGTCGCCGGATGGAGGAGATCAGTGAGCATGCTAAGGGCCTCACGCTGAGCGATGATCTGGAGAGAAGCCTGGAGGAAAGGGTCAACCTGTTCTACAATTTTGTGAAGCAAAAGAAGGAGCAGGGAGTGATTGACTCGGCTGATAAAGAAATCCTGGCTGAAGCGGAGCGGCTTGAGGTGAGGGCCATGGGCCCGCTGATTCTGAGTGAGCTGCTTTTTGACGAGAACATCCGTGAGCAGATTAAGAAATATAAGCGCCACTTCCTTCGATTTTGCCACAATGATAAAAAGACTCAGAAGTACCTCCTGGGTGGCATTGAGTGTCTGGTGAAGCTCCATCAGAGTCAGCTGCTGCCTCGCGTCCCCATTATTCTCAAAGACCTGTATGACGCTGACCTGCTGGAAGAAGACGTCATACTCGCATGGGCCGAGAAGGTCTCCAAAAAGTATGTGTCTAAAGAACTCGCTAAGGAGATCCATGCCAAGGCTGAGCCCTTTGTGAAATGGCTGAAGGAAGCAGAGGAGGAGAGCGAGGGCAGTGATGAGGAGGACGAGGAAGATGGAGACAATGTGGAGGTGGTGTATTCCTCCTCTGCACGTGAGCTGAAGATGGAAACCACAAAGCCAGAAAAGGCTgataaggaggaggaggatatTGATATCGatgccatttaaaaaatttaacgAAGTAATGAAGCTGCCTCTTGATACTTTGCAATGCTGCTCCTTGTTAAACTGTTTCTGCTCTTCAGCTGTAGGCCTGCGTCAGTGCTCTGCTAGAAAGCCTTATTTTAGTCACTATTTGAAATCGTTGCCATTGTATTTATATGCATGAAATTCTTTGGATTATAGGGTGCTTGTCATGCCCCTCCCCT

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03262 EIF5; translation initiation factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344782 lncRNA upstream 49605 6834407 ~ 6834698 (+) True G291037
TU344666 lncRNA upstream 156789 6713927 ~ 6727514 (+) True G290935
TU344600 lncRNA upstream 461337 6422672 ~ 6422966 (+) True G290879
TU344584 lncRNA upstream 541763 6342263 ~ 6342540 (+) True G290863
TU344375 lncRNA upstream 646387 6237714 ~ 6237916 (+) True G290699
XR_004580109.1 lncRNA downstream 37016 6930369 ~ 6933860 (+) False LOC117599731
XR_004580108.1 lncRNA downstream 37022 6930375 ~ 6933860 (+) False LOC117599731
XR_004580107.1 lncRNA downstream 37025 6930378 ~ 6933860 (+) True LOC117599731
TU344819 lncRNA downstream 45838 6939191 ~ 6939619 (+) True G291058
TU344857 lncRNA downstream 88610 6981963 ~ 6982804 (+) True G291096
XM_026944427.2 mRNA upstream 16272 6850356 ~ 6868031 (+) True LOC113545215
XM_026944567.2 mRNA upstream 35770 6833386 ~ 6848533 (+) True tnfaip2a
XM_026944379.2 mRNA upstream 76962 6797339 ~ 6807341 (+) True si:dkeyp-72h1.1
XM_034313819.1 mRNA upstream 184486 6691634 ~ 6699817 (+) False LOC113545329
XM_026944644.2 mRNA upstream 184486 6691636 ~ 6699817 (+) True LOC113545329
XM_026944596.2 mRNA downstream 12168 6905521 ~ 6911188 (+) False fam167ab
XM_026944595.2 mRNA downstream 12173 6905526 ~ 6911188 (+) True fam167ab
XM_026944554.2 mRNA downstream 93756 6987109 ~ 7003630 (+) True mtmr9
XM_034313789.1 mRNA downstream 93770 6987123 ~ 7003630 (+) False mtmr9
XM_026944555.2 mRNA downstream 95649 6989002 ~ 7003630 (+) False mtmr9
XR_004580141.1 other upstream 1082610 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1904903 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 119389 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 696015 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 989865 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 991292 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 994175 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile