RNA id: XM_026944474.2


Basic Information

Item Value
RNA id XM_026944474.2
length 3508
RNA type mRNA
GC content 0.50
exon number 9
gene id rtn1b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7724306 ~ 7767694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGCTGAACCGAACGAGCCATTTTCGCAGGCGCGTGAGGAAGAGCTCAGCCCGACAACACGCGCGCGCTGCTTTGTCATtttgtcctctgtgtgtttacCGTCTGCTCGTATCATTTAATTCAacgaagaaaagaaaaaaagagtcgGTGTGTCTGAGGCGCATCGCGCAGGCATGTCGGTGAAGCCGAGCGGAGAGTCAGGATCAGAGGGCGGCTGGTGCGGAGCCGatgtggagaacatggagcTGTTCGGGAAGAAGAGCAGCTCGGCCCGCTTTGACGACTCGGAGCGCGAGGACGAGCACAAGCAGCACTCCCACCATCCGCCTCACCCCGTTACCATGGAAACTGCATCTACAGATAAATCAGATGCAGATCTCCTGAAGAAGTCCATCATTGATATGGGTGACCCTTACACATCCCTCCTGTCTGGCTACTCCTCTCAGATGGACACCTCCTACTTCTCGGGTGATGTCAGTGGAGGGGAGCAGAAGCAGCAGGCAGGAATTGATGACCTCATCTCAGGCCTGGATTGCCAGTCTGCCATGTTCAGCTCAGACTCAGGTATCGAGATGACCCCGAGTGCTGAGCTTGGCTACAGCTCCCACAAGCTGCGTGACTCAGACAAGACCCCCGATTCCACCTACAACTACATGGATATCAGAAGCAGAGAGGATCCCCACAGCCAGCCGCAGTCCTTGGAGGATTGGGGGATCAGTGCCGCTTCAGAATCTGCTCCTCTATCCAGCCTGAGGGGAGGGCATTACTTGGAGAAGAGTCCTTCACCTGTGGAAGTGGAGACACTGGGCCCCTCTGCAGCTGCGCTTGACTCACACACTTTCCCCTATGTAGAAGAACCATCAGATGATGAGCTCTCTGACTACCAGCCTGACCGCTCACCAGTTGCTGAGGGCAGTGCCAGTCCAGTCAAGATCACCTTGACAGAGACGCCACCCTTGTCAGTCTCTCCTGTGGCCATCCAGCGTGCCTCTCCTGTCCCTGTTTCTGAGaaagagagcatcctgagcctGGGGCTGCAGGGCGTGCCCACTGTCACACTGTCTGAGCCAGAGGATGAGAGTCCAGGATCTTCCACTCCACCACTGACAGAAGAGTCTGACTCTCCATCCGATCCCATGATCCAGGCCACTGATGTGAAAACCCAGGAGAAAGCTCCAGAAACTTCCTTAATGTTCTCTCAGACTGCGCCCAAATCTCAGAGTCCTTCCTTGGAGCTTAAGAGCACCCCCACTCTTCCCCTGTATGCCAAGGTTACAGATGCCAGCAGTGGAGACTCAGGTGATTCAGAGATTGAGCTTGTGTCTGAGGAGCCAAGCCCACAGGCCCCCAGCTCTGCCTACATGACCTTCAGCAAGAGCCCCAGCACCCCTCCACCAGCTCCTGCCACAACTCAAGctcctgtttctgtctctgtccctgccTTTAACCCTCCCCCTGGCCTTGCTTCTGCCCCCATTTCTGCAGCCATGCAGTACAGCATTCTGCGTGAGGAGCGAGAGGCTGAGCTTGATAGTGAGTTGGCCCTGGAGTCCTGTGAAGAAGAGAGCCCTAAGAGATTTCCCCAGGACTCATCCATCAAGGTAAGCAAAGTCAACTTGCAACCGGCTGAACCTCCGTCCACCTCAGCTACAGTGACCACTGCTCCCCCTGTGAGCCCTGCACCTCCACCTGCTGCTCCAGTCTCTGTTGATGCTCCTAAAGAGAAGGTGGCAAGTGAGGGAGAGGACGAGAAGACAAAGCCCAGCAGTAAACCTTCACCCCCCAGTGCAGTCCTGCCTGAACTGAAGGTGGAGCAGCCTCCTGAAGAAAGACAAGCAGAGAGGAAACATTCTAGCGCCGAAAGACACCCCACAACTCCTGCTATCTTCCAGGGAATAACTAGAGAGAAGGCGATGGAGCTGTTGTACTGGCGTGATGTGAAGCAGACTGGCCTGGTGTTTAgcagtgtgctgctgctgctcttctCTCTGACTCAGTTCAGCGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCCGCTCTCTCCGCCACCATCAGTTTCAGAGTCTACAAGTCCGTCCTCCAGGCAGTGCAGAAAACCGATGAGGGACACCCCTTTAAGTCATATCTGGAGATGGAGATGTCCCTGTCACATGATCAGATGCAGAGGTATGCCGAGAACACCCAGCACTACATTAACAACACTCTGAAGGAACTGCGCAGGCTCTTCCTAGTGCAGGACCTGGTGGATTCACTAaagTTCGCAGTGGTCATGTGGCTGCTGACCTACGTGGGAGCGCTCTTCAATGGCCTCACTCTCCTCATCATGGCTGTGGTGTCCATGTTTTCCATGCCTGTGGTGTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGACTCGTAAGGACTCAAGTAAACACGGTGGTGGGGAAGATCCAGGAGAAGATTCCAGGAGCAAAGCGAAAGGCTGAGTAAACAACCCAGCGCCACTGGAGAATACAAGGAGACCATGACCAGGCTTTCCCTTATTATAGGGAGAGCTTCTCAATAGGTCATGggtttcctctcacacacacgcacacacacattaagaaacacatatacacacatacatacatgtacagatacacatgcacattatGTACAAGTTACTGGAGCATAGTTCTACTTTGTGCACACTGTGGTGTTTAGAGCAGCAGCCGAGCCGTTCAGAGAAGTCCCACCCTTGCCCAATAAccatagaggaaaaaaaaaaaaagacaaaaacgtGCCGTCACTCAAGCACTAAGCTCTAgtaaatttaaaacaatgacaTATAAAAGAgttgtaacaaaaacaaaaccaaaaaaatctgtgttttcGTGTTGCTTATTAAGTGCATGAAGTCAAGAGTCTTAAGTGCTGATGcgtttcttcttttcttctggtTTCCTGTGCTCTGGGCTTTCTCAGCTGCGCTGAAGACGTttctctgtagtgtgtgaacgATGTCTTCAGCTTTAGTGCTCTCCTGTGATagtctcttcttcttcttcttcttcttctttggggTAAAAAGTCCAAAAGCAGCTTTTTTGTCTGTGGCACTGGGTGGGTCTTCTCTCTTCTCATTATACCTGGAAACATATACACTTAAATATTACTATCAGCTAGACGCGTGGACATGCCAAGGTTTACCTTCTGTGTGTGGCAAAAAAGACAATATTTAGCAGTGTTCTGATTAGGTATGGTAAACTAacttgtagtgtttttttttaatataatttgttaCAGGAACTACAGAGATTCATGTTTTTAGGTACTGTTGTCAAACTTCTTTTAAGTGAACtgcaaatgaatgaaagagacGGAGGAGGAGGAAGCTTAAAGCAAGAGAATGCCAGCTTGGTGATTGTGTCCATCCTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCACTGCTGAATGCgaaaataaatgttcttaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345444 lncRNA upstream 56501 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 58297 7665129 ~ 7666009 (+) True G291581
XR_003404600.2 lncRNA upstream 109326 7610487 ~ 7614980 (+) True LOC113545343
TU345246 lncRNA upstream 202183 7521924 ~ 7522123 (+) True G291434
TU345235 lncRNA upstream 203448 7489308 ~ 7520858 (+) True G291423
TU345535 lncRNA downstream 9935 7777629 ~ 7782008 (+) False atp5mpl
TU345543 lncRNA downstream 65636 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA downstream 65636 7833330 ~ 7837080 (+) True G291644
XR_004580121.1 lncRNA downstream 178258 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 358327 8126021 ~ 8127898 (+) True G291769
XM_026944579.2 mRNA upstream 85202 7636185 ~ 7639104 (+) True six1b
XM_026944346.2 mRNA upstream 94384 7623221 ~ 7629922 (+) False six4b
XM_026944345.2 mRNA upstream 94384 7623222 ~ 7629922 (+) True six4b
XM_026944338.2 mRNA upstream 221868 7478282 ~ 7502438 (+) True rhoj
XM_026944424.2 mRNA upstream 367392 7348155 ~ 7356914 (+) True chrna2b
XM_026944647.2 mRNA downstream 6798 7774492 ~ 7776361 (+) True rd3l
XM_026944390.2 mRNA downstream 9903 7777597 ~ 7781997 (+) True atp5mpl
XM_026944452.2 mRNA downstream 17728 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944454.2 mRNA downstream 17728 7785422 ~ 7832026 (+) False ppp1r13bb
XM_026944453.2 mRNA downstream 17728 7785422 ~ 7832026 (+) False ppp1r13bb
trnac-gca_25 other upstream 134867 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 704620 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1922613 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2744906 4941952 ~ 4979400 (+) False dnm3a
XR_004580100.1 other upstream 2750245 4941951 ~ 4974061 (+) False dnm3a
trnaa-cgc_5 other downstream 115524 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 116951 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 119834 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 120315 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 121071 7888765 ~ 7888836 (+) True trnaa-cgc_7

Expression Profile