RNA id: XM_026944480.2


Basic Information

Item Value
RNA id XM_026944480.2
length 2467
RNA type mRNA
GC content 0.41
exon number 6
gene id clic5b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8446316 ~ 8459728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCCCATGCGCTCCACTGCACTCCTGTCCTCTCCCCTCAGCAGCAGGTGCACGTTTCAGACGCTTCAGCCCAACTTCTCAGACTTCAAAAATGGCAGAGGAGAACATATATGAGAAAATAGACGATGAGAACTTGTATGAAAAGCCTTTTGATGAGCCAGACTTCTCTGCTAAGGAGGAACCAAAGTATGAGAACCAAAGCACGTTTGCCTACGACACCCCAGTGACAGACGCGATTTACAGCGAGATTGATGTTCACAGTAAGGCAGAAAGAAGTTTGTCTCCAGACTACATAAACAGTAATGAAGTAACAGAGGAGGCAGAGGAAATCCCGACTGAAGCCCAGAACGGTGTAGGTTTGTATGAGGTTCCAGCAGGGGAGAATGAAGAAGAAATGTCGTCCAGACGCTCATCCGCATCGTCCGCTGAGCACTTCAGAGAGCCATATGATGAAGAGCAGCTACAGGAGGCCACTTATGAAGACAACGCAGAGGATGGGATGATGATGGCTTACTCACTGCCAAAGGGCAGAGCCGCAGGACCGGAGGAAGAAGTGGTGGACTACAGTCTCAAACCTGTGCAAAACAACAACgttgaagaagaagagaaacctGTAGATCCCAGTCAGCCTGAAATTGCACTCTTTGTCAAGGCTGGGAGTGATGGGGAGAGCATTGGGAATTGTCCATTTTCTCAACGCCTCTTCATGATCCTCTGGCTCAAAGGGGTTGTCTTCAACGTCACCACTGTGGACCTGAAGAGGAAACCAGCTGACCTGCATAATCTGGCTCCAGGCACACACCCTCCTTTTCTCACCTACAATGGTGAGGTCAAGACAGACATCAACAAAATTGAGGAGTTTTTAGAAGAAGTGTTAGCACCACCAAAATACCCCAAGCTGGCAGCCAAGCACAGGGAGTCCAACACAGCGGGGATTGACATATTTGCAAAGTTCTCAGCTTACATCAAAAACTCAAGGCCAGAAGCCAATGGAGGGCTGGAGAAAAACTTGTCAAAGGCCATAAAGAAGCTGGATGACTACCTGAACAGCGCTCTGCCTGAGGAGATAGACGCAGACAGCGTGGAGGACGAGAAAAGCTCTACCCGCAAGTTCCTGGATGGCAATGAACTCACCCTGGCAGACTGCAACCTCCTGCCAAAACTCCACATAGTCAAGATTGTTGCCAAGAAGTATCGTAACTATGACATTCCTGCTGAAATGACAGGAGTGTGGCGCTACCTGAACAGCGCCTATGTTCGAGATGAGTTCATCAACACCTGTCCTGCAGAAAAAGAGATTGAACTGGCCTACCAGGATGTAGCCAAATGGCTGGTCAAATAAAGCTTGTGGCACAAATATCAGACCAATTAGACTTTATAGGTGCAGGCAGAAATAGACTGCACTGGTTTTATAGAATTTAGTTTTGTATCATTGAAAACAGATCTTGCAGTGAAACCACTCTGGTTAGCCAGAATTCTGTTCTGcaacacaaaataaagaaatatgatGACTCAGTGCAGGCCAGGGAAGTCTCATTCCCCTGTAGTGATTGTGTCTAAACTATCTGTCAAGGCTAGATAAATAGTTTTCCAcgagttttcttttttcagctaTTTGCTGCAATTCTATTATTTACATCAGTAGATTAGTATTATTTAAAGAAGATATTATCTGTCAATAACAAGCATATACATTAAAGTTGACAGCTAAATATAGAAAGGATCTATTAATTAGTAGATTCAAGTTTCTAATTTGATGATGATTTTCAGGACTCAGGATTGTcttaacatataaaaatatttaataggaATACTAGTGTGTCTGAATGATTATTtagaaaaagaacaaatgagCAATGGGACAAGATAAAAGTGAAACAACTTTTAATGCAAGATCtgaaaatcatatatatatatatattttttacttttattgttttaattacaactctaaaatattttcataatgcCTCTAAATCAATTAATTAAGATATGTGCATACATACATTCCCAGCTCAGATATTAAACTCTTTCATTTAAagtatatatttcattttgattCAACAGACATCCTCTCATTTTCCTACAACTTCTTTGGTGAAgtacattttattgtgttaaCATTTTACTTATCTTTTTGTCAGCTGATATATGTTTCCGAAAGATTTAGTCTTGTCCTAAATTATATCtgattaatttgtaatttgtattttgagTTGTGTGGCAAAGAAGATTCATGACATCTCATAATGCAGTTAAATCAAGTAAAGCAGTGTAGTCGGGCTCTTCTCCAGGTCTCCTCCACTCTCTGCTGAAATAGCACACAGCTCCACAGACTTCATAGGTCCTCATGGAGCTCGCTGCTCTTGTGTGGCTTGGACAAACATTTGATATGAAAGGGGAGTGTGGCGCCAGAGAGGCCTATCCTGCATGAACCTCTacgaataaaataatatttttacagtt

Function

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006821 chloride transport biological_process

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345853 lncRNA upstream 124857 8309242 ~ 8321459 (+) True G291907
TU345697 lncRNA upstream 318418 8126021 ~ 8127898 (+) True G291769
XR_004580121.1 lncRNA upstream 498285 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 609236 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 609236 7833330 ~ 7837080 (+) True G291644
TU345951 lncRNA downstream 5109 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 11219 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 29241 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 29241 8488969 ~ 8534500 (+) False LOC113545369
TU345980 lncRNA downstream 50841 8510569 ~ 8510776 (+) True G291996
XM_034313589.1 mRNA upstream 140717 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA upstream 140717 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA upstream 145577 8296614 ~ 8300739 (+) True LOC113545195
XM_026944387.2 mRNA upstream 255735 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA upstream 255735 8173162 ~ 8190581 (+) False esr2a
XM_026944651.2 mRNA downstream 90214 8549942 ~ 8557745 (+) True LOC113545337
XM_026944368.2 mRNA downstream 140683 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA downstream 140897 8600625 ~ 8605983 (+) True wdcp
XM_026944500.2 mRNA downstream 176722 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA downstream 176722 8636450 ~ 8701451 (+) False atad2b
TU345691 other upstream 371879 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 557480 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 558236 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 558717 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 561600 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 28919 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 431940 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 533785 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 614300 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1444022 9903750 ~ 9950731 (+) True G293016

Expression Profile