RNA id: XR_004580138.1


Basic Information

Item Value
RNA id XR_004580138.1
length 3498
RNA type misc_RNA
GC content 0.50
exon number 29
gene id LOC113545247
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9074028 ~ 9179173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCACTCGGAGCGCAAACCAGCGAGACAGCGTGTGAACCAGCATCCTCTCCCACTGCTGTCCAACAGCCCAACTAAAGCGCACGGAGCTGATGCAGTATGGACAGTAACGCGCTTCAGTTTCCCACGGACTGGCACTAAaatccacttttttttaaatgccttaAGAGTTTTTCCCCCAGTGGACGGGAAATTGACAGTTGTGCGTTTGCGGTAAGAGTCGGCGCACTCAGATGGCGGGGCCGCAGCCGGGAGTTCACGCGCTCAAGCTCAAACCCGTGGCCGTACCGGAGAGTCTGAGAAAAGGAAACAAGTTCATGAAATGGGAGGATGACTCCACCACTGTGACTCCTGTGACATTACGGGTTGACCCCAAAGGCTACTTCTTGTACTGGACTGATCAGAATAAGGAGACAGACCTTCTGGACATTGCTTATATCAAGGATGCTAGAACTGGGAAATATTCCAGGACACCTAAGGATGCTAAAGTGCGGGAGCAGCTGGGTGTGGCCGGTGTGGTGGGAAAGATTGAGAACAGGATGCTGACAGTGGTGACTGGTCCAGATATGGTGAACATCACCTTCCTGAACTTCATGGCCTTCCAAGATGAGGTGGCTAAGGAGTGGTCAGACGAGCTCTTCAGCTTGGCCTCCAACCTCCTGATCCAAAACATGTCCCGGGAGTCCTGTCTAGAAAAAGTGTATACTAGACTAGTGCTGCAGCTCACTCCTGAGGGATCTATTCCTGTGAAGAACATCTTCCGTGTGTTTTCGGCAGACAGGAAGCGGGTTGAGAATGCACTGGAAATCTGCGGTCTTCCATCTGGAAGAagtGACTTAATTCCCCAGGAACAGTTCACTCCAGATATATTCAGAGTGTTCCTCAATAACATTTGTCCCCGGAAGGACATCGATACCATCTTCTCAGAAATTGGTGCTAAGAGCAGGCCATACCTCACAGTAGATCAGATGACTGACTTCATCAACAACAAGCAGCGGGACCCTCGGCTGAACGAGATCCTGTACCCTCCCCTGAAGCCCGAGCAAGTGCAGGCATTGGTGGAGAAGTATGAACCTGACACCATGCTCTATCAAAGAGGGCAGATCTCTGTGGAAGGTTTTGCCAGGTATCTGAATGGAGAAGAGAATAGCATCATCCCTCCTGAGAAATTGGACCAAAGTGAGGACATGACATTTCCTTTGTCCCACTACTTCATCAACTCCTCCCATAACACTTACCTCACAGCGGGGCAGCTGGCGGGAAACTCCTCAGTTGAGATGTACAGGCAGGTGCTGCTGTCAGGCTGCCGCTGTGTGGAGCTGGACTGCTGGAAGGGACGCACAGCAGAAGAGGAGCCCATTATCACCCACGGCTTCACCATGACCACCGAGATCTCCTTTAAGGAAGTGATTGAGGCCATTGCTGAGAGTGCTTTCAAGACATCTCCTTTTCCTGTCATCCTTTCATTTGAGAACCATGTGGACTCCCCCAAGCAGCAAGCTAAGATGGCTGAATACTGCAGATCAATATTTGGAGACGCTCTGCTCACAGAGCCACTGGAGAAATATGCACTGGAAGCAGGAAATCCTCTGCCAAGTCCCATGGACCTCTTGGGAAAAATTCTCATCAAGAACAAGAAGAATTCCCACAAGGATGAGAGCAGCACAAAGAAGAAGCTCTGTGAGCAGACCTCTAATACCTGCAGCGATACATCCAGCGTGTGTGAGCCGTCCTCTCCAAGTGCAGGCTCCACAAATCACGACATGCCAGATTCCAGTCAGCCAAGCTCAGAGACGGGCAGTGACAGCAGGCTGCAGGGGAGAAAATATATTGGTGAGGTTGATGCAGAAAgcgaggatgaggatgatgaagatgacgaCTGTAAAAAGTCCATGGATGAGGGGACAGCAGGAAGTGAAGCATTTGCCACCGAGGAGATGTCCAACTTAGTAAACTATGTCCAGCCGGTTAAGTTCTCCTCATTTGAAGCATCTAAAAAGTCAAATAAAAGTTATCACATGTCATCATTTGTGGAGACAAAGGCACTAGAGCAGCTGACAAAGTCACCAGTGGAATTTGTGGAGTATAACAAACTCCAGCTTAGCCGAATCTACCCCAAAGGCACTAGGGTGGACTCCTCCAACTACATGCCTCAGGTCTTCTGGAACGCTGGATGTCAGCTTGTGGCATTGAACTTCCAGACCATAGATCTGGCCATGCAGCTGAACCTGGGCATGTATGAGTACAATGGAAAATGTGGCTACAGGCTGAAGCCTGAGTTTATGAGGAGGCCTGATAAAAACTTTGACCCCTTCACTGAGAGCACAGTGGATGGGATTGTAGCGCACACACTTTCAGTGAAGATCATATCAGGACAGTTCCTGTCTGATAAAAAGGTTGGCACCTATGTGGAGGTGGAAATGTTTGGCCTCCCAGTGGACACAAAAAGGAAAGCATTTCGGACAAAAACATCCCCAGGCAACGCCGTGAACCCTGTGTGGGATGAGGAGCCCATAGTCTTTAAGAAGGTGGTTCTTCCCACTCTTGCGTCTTTGAGAATAGCCGTCTACGAGGACAGCGGGAAGATTATTGGCCATCGCATCATCCCAGTGAACGCCATCCGGCCTGGTTACCATTACATAGGGCTAAGAaatgagaagaaccagacaCTAACACTACCTGCTGTTTTTGTCTACACCGAAGTCAAAGACTATGTCCCTGACACCTTTGCAGATGTGATTGAGGCACTGTCCAATCCTATCCGCTACATCAACCTGATGGAGCAGAGAGCCAGTCAGCTTGCAGCTCTCACCCTGGAGGAGGGAGGACAAGAGGTGAACAACAAAGAGATAGATGCGTGTGGGGAGCTTGTATCAGAACCGAACAGCGAGGCCCAACGCCCTCCAGCTGAGAATGGAATGAGCCATACTCCTCTCATCTCCCCAAAACCGCCTTCACTGGTCAGCCATCATGCCCACTCCACAGGATCTGTGAAACCAGCTGTTAGGACTGAAGATGTGATTCAGAGTTTTTTGGCAGaggTGGAAGCTCAGACACTGGAGGAACTGAAGCAGCAGAAGGCTTTTGTTCGGGAGCAGAAGAAACAGTATAAAGAGCTGAAGGAGTTAGTAAGGAAGCACCATAAGAAAACCACAGACATGATCAAAGAGCAAACAGCCAGACAAAGTGAGCTGAAGAGCGAATATCAACGCCGGCAGTCCGCCCTGCAAAAGAGCGCCAAACGAGACGatCAGGTTCGGAGCAAGCTCTGTCTGCTGTGGAACAGGAACTGGCCGCTCTGGAGGACGAGAACATGCAGAGACTGAGCGAGCTGAAGGAGCAACAGCAGCATCAGCTGCTCACTCTCAGACAAGACCAGTACTACAGTGAACAGTACCTCAAAGGCAAACACATCAAACAGCTGGTGGAGAAGCTGACCACTGTAGCTGAGGAATGTCAGAGTAACCAGCTGAAGAAACTTAAGGAGCTGTGTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346095 lncRNA upstream 368784 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 488126 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 490551 8582950 ~ 8583477 (+) True G292072
XR_003404603.2 lncRNA upstream 539528 8488969 ~ 8534500 (+) False LOC113545369
TU346720 lncRNA downstream 247591 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 253650 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 393536 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 426799 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 451087 9611988 ~ 9612612 (+) True G292756
XM_026944361.2 mRNA upstream 32121 9037111 ~ 9041907 (+) True bmp2b
XM_034313446.1 mRNA upstream 32121 9037111 ~ 9041907 (+) False bmp2b
XM_034313447.1 mRNA upstream 32121 9037111 ~ 9041907 (+) False bmp2b
XM_026944403.2 mRNA upstream 83499 8987232 ~ 8990529 (+) True chgb
XM_026944503.2 mRNA upstream 127027 8940392 ~ 8947001 (+) True gzf1
XM_026944463.2 mRNA downstream 22531 9183432 ~ 9255249 (+) True LOC113545235
XM_026944464.2 mRNA downstream 22531 9183432 ~ 9255249 (+) False LOC113545235
XM_026944465.2 mRNA downstream 22532 9183433 ~ 9255249 (+) False LOC113545235
XM_026944466.2 mRNA downstream 22532 9183433 ~ 9255249 (+) False LOC113545235
XM_026944467.2 mRNA downstream 22532 9183433 ~ 9255249 (+) False LOC113545235
TU346212 other upstream 77032 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 182288 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 564545 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 999591 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 1185192 7888765 ~ 7888836 (+) True trnaa-cgc_7
TU347160 other downstream 742849 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 998054 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1858015 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1982986 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1984038 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile