RNA id: XM_026944489.2


Basic Information

Item Value
RNA id XM_026944489.2
length 4314
RNA type mRNA
GC content 0.45
exon number 16
gene id dsc2l
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6214741 ~ 6230552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaGAGCATAGCGGTGTTCAGGCTACTCCCAGTCTccacgcctcctccactccGCACCCTCACTCCCAGAGAGAGAGGACATTTCACCTCGCCTCACTGCGCCATTCTTTTCCGGTCTACGGAAACTAGTCGATGTTCAACATGTCCCAGCTCGGCGTTTTCTCTCATGTCCTATTCGTTGTGctgaTGTGTTATTGCGTGGAATCATGTGTCCAGAAGCATATCCATGCACAGGTTCCTGAGATGCTGGAGCCTGGTTATGTTGTTACTCAAGTGAATTTGGATGGTTGTGGGGTCGGGCCTCTGGGTTTGACCTCCAGTGACCCAGCTTTCACAATACAAATGGACGGCACCATCCAGGCTGTCCTTTTAAACGTAGTTCCAGTGGATGGCAAGTCTTTCTGGATAACTGTCCAGGACCACCAGGGTCACAGGTGGTTTATGGATGTCAACCTTTCCTCCACTGGTCAGGTGTCCAACAGTGCAGTTCTCAAACGCTCCAAAAGAAGATGGAGTCCTCCACCTTTCAGTGTCAAGGAGAATGGCAAGGGTCCTTTCCCCAAGGATATGGAAATGATTGCATCAGACACCTCAGTAAATTACTCACTTTATTACGTCATTAGGGGAGCTGGTGTTACCCTTAACCCAGTGGGTCTTTTCTCAGTTATCACAAATACTGGCATGTTAAGAGTCCATGGCCCCATTGACCGTGAGCAGTACCCTAAGATTGTATTTGTGGCCCATGCCTATAACGTCTACAACGATCAAGAGACTGACAGTCCTCTGCCAATCACTGTGCTCATAGAGGATGAGAATGACAATCCTCCAGAGTTCTCTGGCCCTATGGTCTTTGCTGTGCAGGAGCAATGTCCAGTTGGCACTGTTGTAGGTACAGTGAATGCAACAGATAAGGACGAACCGAACACCCTTCACACCAAGATCAGGTTCACTCTACAGAATGGCACCAACCTGTTTCGTATTGACCCCTCCTCTGGAATTATCACTGTCTCTACCAACACATTGGACAGAGAGACAGTAGAGAAGTACATTCTTGGAATAGAGATCAAAGACATGAATGGAGCACCTGACGGTCTTTCCAACATAGGGAGGGCTGTGGTGTCTCTCACTGATATCAATGATAACCCACCAACCTTTACTGAAACATCGTACAACGGCAAGGTGACAGAGAATGCAGCAGACGTGCTGGTCCTCAGGATCCCTGTGAATGACAAGGACTTGAAGAACACCCCCAACTGGAAAGCAGTGTATGAAATCACCAAGGGAAATGAGACCGGCAACTTCTTTATCAAAACTGATCCGGTCACAAATGAAGGGCTGCTTTATGTCACAAAGCCTCTGGATTATGAGAAACAGCCGACAGTGAAACTGGAGGTGATGGCACGTAATGAGGCTCCTCTTGTAGGAACCAGTGCCATCTGGCAGAAAGTGCCTGTGGACATCAGTGTGGAAAATGTGGACGAAGGACCAGAATTCTCTGTACCTACACTCCTGCTCAAAGTTAAAGAGAATGTACCCAACGGGACTCTAATCGGAATCTACACAGCCACTGATCCAGAGACCAAAAGCAGCAATGGCATAAACTACTATAAGTTGAATGACCCAGGTTCCTGGATCAATGTGATGGGCAGCACTGGCGAGCTGAAGACAGCAATGACCATTGACAGAGAATCACCActtgtatataataatacatataacaTCACTGTGAAAGCAGTGGATAAGAGTCAGAAGAGTGGTACTGGTACAGTGGTGATCCTCATTGAGGATGTGAATGATAATGTCCCAAAGATCCCTAAGCCAAACCAGGTCCTGTGCAGCAAAGACGGTACACGGGGCTCCATCCTCGTTGAGGCTAAAGACCTTGACCAGAAGCCATACTCAGATCCATTCTCCTTTCAACTGGGCAGTGCGAATGCTGGGCAATGGAGGCTAACGGGTGCCACAGGTACCTCAGTAATGCTGGAGCCAACTATGGACTTGCCCAATGGTATGTACCAAGTCCCAATACTAGTGAAGGACCTTCAGGGTTTTGGGGAAGAGCAAACAGTGTTCGTGCAAGTATGTAAATGTGCAAAGGAGGGAGAGTGTGCACCTCAAAATTTTTCCACCACACTGGGAGTGTGGGGTATCCTCGCCATGCTGCTGGGCCTGCTGCTGCTTCTATTGCTCTGTCTGCTGTGCATACTTGTGTGTAGCACAAAGGGAGAGAAACTGCCTATGGCTGATGATGATGTACCTGGTGGGATGCTGCTCAAATCCAACTTTGAAGCTCCAGGGGAGGAAGTGAAAGACGGACTGATAATCATACCTGCCAGTGGGGCAGATGTAATGGACAGCTTTAAAGGAGGAGCAAATTTTGGACAGAAGCAAACTTTTGGAGGCAGCATGTACCAGAACAACATGCAGGGCTTCCTGACCACCAACACATTGTCCTCTGGACAGTACAACACGGGCATGTACGGCAGCTCCTATAAGAAATACTCCACTTTGTCAACGATGGATGGGTGGAGGGAAAATAAGATTCAGCTTGATAAAAAACTGGTCTACTTTCGAGAGGAGGCAGCTGCACGATTTGCAGAGGATATCCTGAGGCCTTATGGGTATGAGGGAGTGGGCTCTCCTGCAGGGTCTGTTGGGTGCTGTAGTATCCTCACTGACCAGGAGTCACTGGATTTCCTTGATTCGCTTGGACCCAAGTTCAAACCGCTTGCTGATGTATGCACAAGCAAATCACAGAGGGGAGGGCAATGAAATAGGTGGAGATAATGATTAGAAAATAGGAGAAATGACCTGAGATCATTTGGAGTAGCTTATTAGAATGGATCTGTCTTCGCTCAGACAAAGAGGAGGATAAGGAGAAATGCAGATACGCTGGATGTTGTGAACACAACCACTGAAATCTGTCACCAAACACTAAAGCCTTATGTATTACTATCTGGAGTCTACGCCAGAAAAAGGACTGCTCCTTTCAGATTAAGTGTGTGGagtatgtgagtatgtgtgtatgtgtgttttatacttGATTTGCTTTGGTTTGCTGTTTTGTGTACTACTATAGGCTGGATCTCACTGTCAAAGCACTGTCAAAGCCAATGAATTTTTGTATGATTATTTCTCTATtgtgtaataaaacaattttccaTGGGGACTGGGAGGCCCTAGCATGTCCCAGCAGCACCCAAATTTTAATGGGTCTCGGGGCAGGGGGCTCATGTCTCCTGCCTCTAAAATGGTTGAATTCCATTTCTGAAACTGCAAATCTATAGAAGACTACGAGCATTTTCTATATTTAGTTTCTACTATAACAAGCttgcttttaattattaaacttgAATGAATATAATGAATGTAAAGCTTTCAGAGACACGTCTTTCCATTTTTACTGGTTGTCTCTGTAGGGGATGTTGGTGCTGGTATATTGCTAGTTCTTGTTAGAACCCTGTCACGATGGTTCTGAGTATTACTAAGGGACTGATGGGTTCTAAAAACCATTTGATAGAAAATTTTATGGGCTCAAGAATGAAGTGACAGTAAGTTTAAACAGGAATAATGGAGACTGCTGGTCTatgacagtttctctgcattGACTCTGCATTTCGTGTTTCACGCAAGATGTGAACCTGCAGCATGATTATGTGTGAGTCACATATCAGAAACTCATCAAACCAAACTCATTCCACTATTCTTTATAAACTACTGTTGTTAATGCTTTGTTGGTATGCTTTTGTGTGAAATGGGAATACTTTATACCATACGGTTCACTCTAAGATTGTGTCATGAAgatattaaataaggaataatacacaacGTGGCATGCGGTAGGAGAATTAGCAGCTAGCACCAATGGGCTGGTGGGATGCAGCcttggagtgttttattcttcttatactacagcaatttgtcaacaattacagaTTATTAAGGAATGACTCATTGTGCATTTTATCTGTTCATAGTTACATGTTGTGGGACATCTGCAAggcaagttagttcttgttatcacttacattatagcagctataaactgccgttccttcaccagcctctcattttctctctcttgaagtgaataaaTGCAAACTGTCATCTTACCAAGAACCAGTAAAGTgtaaagtcctctgtcttgaagactctcctgtTTCAGAAAACCTCCTGACTGTTAAATAGagcagacactggagactccttccatctccttaaagaaaacttcaatgattgtttttctttgttaaataacaacatctTTTTAACCTGGGTTTTTTTAAGCCTTAGATCATGTAGCGCAATGGTCTT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07601 DSC2; desmocollin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344338 lncRNA upstream 54701 6135952 ~ 6160040 (+) False b4galt6
XR_004580161.1 lncRNA upstream 395675 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 395675 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 406825 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 409153 5804676 ~ 5805588 (+) True G290567
TU344375 lncRNA downstream 7162 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 111711 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 192120 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 483375 6713927 ~ 6727514 (+) True G290935
TU344782 lncRNA downstream 603855 6834407 ~ 6834698 (+) True G291037
XM_026944686.2 mRNA upstream 57977 6135920 ~ 6156764 (+) True b4galt6
XM_026944682.2 mRNA upstream 86839 6090426 ~ 6127902 (+) True trappc8
XM_026944683.2 mRNA upstream 86839 6090426 ~ 6127902 (+) False trappc8
XM_026944684.2 mRNA upstream 86839 6090426 ~ 6127902 (+) False trappc8
XM_026944685.2 mRNA upstream 86839 6090426 ~ 6127902 (+) False trappc8
XM_026944591.2 mRNA downstream 231176 6461728 ~ 6504131 (+) True cdh2
XM_026944583.2 mRNA downstream 392375 6622927 ~ 6629974 (+) True aqp4
XM_026944352.2 mRNA downstream 410415 6640967 ~ 6660584 (+) False kctd1
XM_026944351.2 mRNA downstream 418831 6649383 ~ 6660584 (+) True kctd1
XM_026944412.2 mRNA downstream 431328 6661880 ~ 6676354 (+) True taf4b
XR_004580141.1 other upstream 413048 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1235341 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 782190 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1358816 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1652666 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1654093 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1656976 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile