RNA id: XM_034313707.1


Basic Information

Item Value
RNA id XM_034313707.1
length 4347
RNA type mRNA
GC content 0.52
exon number 28
gene id atad2b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8636450 ~ 8704985 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGCGGAAGTGGCGTGCTGCCTGCGTTCTCTGGCCAAcagcagagggagagagtgagcgagagaaaTGGCGCCTCGGCACTCTAGCTGAGAGACAGTCAATACAGAGGGAACTGACAGAGCCGAGAGGAAACAATACggtagagaaaaaaacatggtgaACACAAGAAAAAGCACGCAGCTCCAGCCATGCAGTCCTGTCATCTCCGGGCGGACGAGGTCGTCTCTTAGGAACAACCCAAACTTGGAAGAACACAACCATGACCCCAGCAGTAATATCAGCTCTGGTAGCCCGCGCTTGTCCCCTCCGTCTAAACGAAAACGCAGACACACGACGCCTAGCTCCAGTGACACTTCCCCAAGTCCCCAGAGCAAAGCGCAGAGAGTTACATGGAGCACATCCAAACACTGCACCAGGTTATCCACTGGTGCTTTGCAAAATGGACACGGCCGAAGAAGCCTGCGGGTAGATGACAGCACAGATGGGGACGATGCTCGCTTGAATGGCCATGTTGAGCTGAAGAGGAGCTGTCGCTCTAGGAAGAGCCGCTTTCAGCACCTCAACCAGAGCCTGCTGTTTGACCAACTGGTCAACAGCACGGCAGAGGCGGTGCTTCAGGAGATGGACAACATCAGCAGCATACGACAGAATAGGGAAGTGGAGCGGCTCCGGATGTGGACAGACACAGAACTGGAAAACATGGATATGTATTCGCGTGTGAAAAGGCGGAAATCGATGAGGAGGAATACATTTGCAATGCAGACACACCATAAAGTCATGGGCAAATCTGAAGCTCCAGAAGAGGAGGAAAGGGAGGAAGAAGAGACTGATGAATCCCATGAGGagggagatgatgatgaaggggaagatgatgaagatgatgaaggagaTGAAGCAGAGGAAGCAGGAGAGGAGAATGACAGACCTTACAACCTCAGGCAGCGTAAAACTGTGCAGCGTTATGAGGCACCACCCATTGTGCCAGTGAACAGAAAACAAAGCAAGAACACAGTGTTTGACACGCACAGATCCCCTGCAAGAAGAAGCCATATTAGAATAAAGAAGCATGCCATCCACAGTAGTGATACAACGTCCTCATCGGATGAGGAGCGTTTTGAACGGAGAAAAAGTAAAAGCATGACACGTGCACGGAACAGATGTCTACCTATGAATTTGCGAGCAGAGGACCTGGCCAGTGGCGTGCTTCGTGATCGGGTGAAAGTTGGTGCTAGTTTAGCTGATGTGGACCCCATGAATCTGGATACCTCTGTGAAGTTTGACAGTGTAGGAGGGCTTACTGCTCACATTAAGTCTCTCAAGGAGATGGTGGTGTTTCCTCTTCTCTACCCTGAAGTGTTTGAGAAGTTTAAGATCCAGCCTCCAAGGGGTTGCCTGTTCTATGGACCTCCAGGGACAGGGAAGACTTTAGTGGCTCGGGCGCTGGCTAATGAGTGCAGTCAGGGTGACAGGAAGGTTTCCTTCTTTATGCGAAAGGGAGCCGACTGCCTCAGCAAATGGGTGGGAGAGTCAGAACGACAGCTCCGCCTTCTCTTTGACCAGGCATACCTCATGAGACCATCTATCATCTTTTTTGATGAGATTGATGGCCTTGCACCTGTTCGTTCTAGCAGACAGGATCAGATTCACAGCTCCATAGTTTCCACATTGCTGGCTTTAATGGATGGTTTGGACAGCCGAGGGGAGATAGTGGTCATTGGTGCTACAAACAGACTTGACTCTATCGACCCTGCACTCAGGAGGCCTGGTCGTTTTGACCGGGAATTTCTGTTCAACCTGCCAGATAAACAGGCTCGAAAGCACATTTTAGAAATTCACACCAGGGATTGGAACCCAAAGCTGTCAGATTCCTTTATGGATGAGTTGGCAGAAAAATGTGTCGGTTACTGTGGTGCCGACATCAAAGCACTTTGCACGGAGGCTTCACTGGCGGCATTGCGGCGGCGCTATCCTCAAATATACAGCACCAGCCAGCGCTACAAACTGGACGTTGGCTCTATCGTGCTGGGGCCGCAGGACTTTGGCCGTGCTCTGCGCGCTATTGTTCCAGCTGCTCAGAGAGCTCTCGCACCACCAGGCCGGGCTTTGTCCTGCACACTGCAGCCTCTGCTGGAGAGATCACTGgcccacacactcacctgccTGCTCCGAGTCTTCCCCCATGCAGAGCTCCCACACAGGGAACAAACACACGACTCTGACAATCACCTGCTGGAGGAGGACTCTTACAGTGAGGGTGAAGATGGAGCTAGTGCTCAGTCCATTTATGATGTTCAGCCAGGATCCCCAAAGAAATCACACTCCTCCATAGTACACAAACCCTTCCTTCATTTTACTACGTCTGCCTATCAGCAGCCAACCTCATACCGACCACGGCTTTTGCTAACAGGCCCTCAGGGTTCGGGTCAGAGCACGCACCTGGCCCCGGCTCTGCTGCATCACCTCAACAAGTTCACTGTGCACCGCCTCGACCTGCCCACTCTCTACTCTGTCAGTGCCAAGACCCCAGAGGAGTCCTGCGCTCAGGTGTTTCGGGAAGCACAGCGGAGTGTGCCAAGTGTAATCTACATGCCACACGTCAGTGATTGGTGGGAGGCCATAAGTGAGACGGTGAAGAGTACGTTCCTCACACTGCTGCAGGATGTTCCCTCGTTCACCCCACTCCTCATCCTTGCCACGGCTGAGATCAGCTACCAGCAGCTCCCTGAAGAGgtaaaaTGCATCTTCAGTCGCTCCTATGGTGAGGTGGTGTGTCTAACAACACCTGGGGAAGAGGACCGCAGAAAGTTCTTCAGTCATCTCATACTGGTGCAAGCAGCCAGGCCACCACTCCGCCCGAGAAAAAAAGtgtgtgatCTTGAGGTGCTGCCTCTGGTGGAAGACCCTGGCCCTCGGCAACTCTCTCCAGAGGAGCAGAAGCGACttgaggagcaggaggagaacACCCTGCGCGAGCTCCGCCTCTTTCTCAGGGACGTCACCAGGCGGCTGGCCACCGACAAGCGCTTCCACATCTTTAGCAAGCCTGTAGATATCGAGGAGGTATCAGATTATCTTGAGGTCATCAGAGAGCCTATGGATTTGTCCACTATCATGACGAAGATTGACACTCAGAAGTACACAACTGCGAAAGACTTTCTGAAGGACATTGACCTCATCTGCAGTAATGCGTTGGAGTACAATCCGGACAAAGATCCTGGAGATAAGATAATTCGACACAGGGCTTGCAGTCTGAAGGATTCGGCTCATGCAATGATCGCCTCTGAGCTGGACCCAGAGTTTGACCGCACGTGTGAGGAGATTAAAGAGTCTCGAAGGAAAAGAGAGTTCCAGATGCCACAGCAGCCAGCTTCCACTCCAACATCTGTAATAGGCAAGAGGCCTGTTGGTGGAGAAGAGGCTACTGGCAGCACGTCTCAGGCTGATGTGGTGGAAAAGCAACACAACAGTAGCATAAAGCGCAAGGCTCGGCGTCGGTCGATTTGGGAGCGGGGCATCAtcaggaagaagaagagcagCAAAAAGGAGGAGgtagaagatgatgatgagcctgaggaagaggaaggagcTGATGACTCAACCATTGCTGGCCAGGGTAATATCAGTCCGGCTCAGGACGAGTCCTCCTCTGATACCATGGAACCCCAAAGTGATAAAGCCCTTCCCCAACCCAATGGTTATGCTCTGAGCACTGAAGAGGAGAACTCCAGTGAAGCCACCACAACTCAAGATCCTCAAGGCCAAGTTAAGGCCAATACGACTACCTTTAAGAACCCTCCTTCTGTAGAGGGCAAAGTGGCAACAGTGCTCTCTGAGCCCCAAGAGTGTGTAAATGGAGATGAGTCAATGGACAGTATAGACAGTGAAGCCAATGAAAAGGAATCAGGGAGTAGTAGAAAGGAGGTcacagcttctttcagcagAGGGGAGCAGGCTCGATCGGAAGATGTGTTACAAGAATGCAAGGCAAATGATTGCACCCCAGCAGCAGATGGAGCAGCTGGTGATGGAGTTCATGAAAAAGAAGgtACTTCCAAAGAGAAGACGTGTAGAAAAAGCCAATCAGAACAGCAGAAGGAAGTCCTAGCAGAGAGGCCAGAGGATCCCCCACagcctccacctccacctgctTTAGTTGTAGACCATCATCGACTCAAGGCCCTGCTAGATCAGGTTGTGATGAAGAGTAAGGGCTACAGTGTGGATCAACTGGAAAGACTTTTCTCGGTGCTCAGCCAGTGTATTTATCAGTACCGCAGGGATTACGACAAGACCTGCCTGATCGAGgAGATGGAGAGGCAAGTCCAGCATTTCAATACATTCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346063 lncRNA upstream 50548 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 52973 8582950 ~ 8583477 (+) True G292072
XR_004580077.1 lncRNA upstream 101950 8488969 ~ 8534500 (+) True LOC113545369
TU346095 lncRNA downstream 3603 8705054 ~ 8705244 (+) True G292102
TU346720 lncRNA downstream 707041 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 713100 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 852986 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 886249 9587700 ~ 9587903 (+) True G292771
XM_026944368.2 mRNA upstream 30467 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA upstream 30467 8600625 ~ 8605983 (+) True wdcp
XM_026944651.2 mRNA upstream 78705 8549942 ~ 8557745 (+) True LOC113545337
XM_026944480.2 mRNA upstream 176722 8446316 ~ 8459728 (+) True clic5b
XM_026944397.2 mRNA upstream 335711 8296614 ~ 8300739 (+) True LOC113545195
XM_026944503.2 mRNA downstream 238941 8940392 ~ 8947001 (+) True gzf1
XM_026944403.2 mRNA downstream 285781 8987232 ~ 8990529 (+) True chgb
XM_026944361.2 mRNA downstream 335660 9037111 ~ 9041907 (+) True bmp2b
XM_034313446.1 mRNA downstream 335660 9037111 ~ 9041907 (+) False bmp2b
XM_034313447.1 mRNA downstream 335660 9037111 ~ 9041907 (+) False bmp2b
TU345969 other upstream 126967 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 562013 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 747614 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 748370 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 748851 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnak-uuu_18 other downstream 190217 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 292062 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 372577 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1202299 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 1457504 10158955 ~ 10161751 (+) False LOC117599798

Expression Profile