RNA id: XM_026944502.2


Basic Information

Item Value
RNA id XM_026944502.2
length 5389
RNA type mRNA
GC content 0.51
exon number 24
gene id jag2b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8088687 ~ 8125663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCAGTAGCTGGGAAACATAATCATTTGCCGTGGAGTGATCTGACGGAGGGAGAgggagtgtgtgcgtgtgtgtgagcgagcgagcgagcgagcgagtgtgtgtttgctgtagCTGGACTGTCGCCGCACTGAACAGCACGCTTGCGAATTTTTGCATGTCAGGAGCGGATGAGGATCCTGTCGCCGGTCATCGGCCGCTGCCCATCTTTCGTCTTGTTCCTAATTAATCAGCGGCATGTGGAATTGCGCGAGGATAAGCAACTGGCTTTGCGTCGCGTGCCTGCTGTTAACGACGTGGACCAAGGTGTCCTGGGCTTCGGGCTATTTCGAGCTGCAGCTGATGAGCGTGGAGAATGTAAACGGGGAGCTGTGGGACGGAGAATGCTGCGACGGCGCGCGCAACTCGCGGGACCAGCGGTGCACGCGCGACGAGTGCGACACGTACTTTAAAGTGTGCTTGAAGGAGTATCAGAGCGAGGTGACCACCACTGGCCTTTGCAGCTTCGGCAGCGGATCTACTGGCGTGCTGGGTGGAAATATATTCTCTTTTAAAAACGCTAAGGGCAACGGCAACAAGATCAGCGACGCCGGGAAAATCGTCATCCCTTTCCAGTTTGCATGGCCGCGATCCTACACACTCATCGTGGAGGCCTGGGACTGGGACAATACCACTCAAAACAGTGAGGAGCTGCTGATTGAGCGACATGCTCACACAGGCATGGCAAACCCTGGGGACCCATGGCAGGTCATTGTCCATCCTGGCGCCACAGCCCGTCTGGAGTACCGTGTCCGCATCAAGTGCGACGAGAACTACTATGGCATCAAGTGTAACAAGCAGTGCCGGCCTCGTGATGACTACTTCGGGCATTACCGCTGCGATCCTTCTGGAAACATTGTCTGTCTGGAAGGATGGATGGGACACGACTGTCGAACTGCAATCTGTAAGCAGGGCTGTAATCTGATTCACGGAGGCTGCTCAGTGCCCGGGGAATGCACGTGTAACTATGGCTGGCAGGGTCAGTTCTGCGACGAGTGTCTACCCTACCCAGGCTGCGTGCATGGGACCTGTGATATCCCGTGGCATTGTAACTGTGAGAAGAACTGGGGTGGACTGCTGTGTGATAAAGATCTGAACTACTGTGGGACACACCATCCCTGCGTGAATGGAGGCACCTGCATAAACTCGGAGCCGAACGAGTATAACTGCGCTTGTCCTGAGGGATACTCGGGCAAGAACTGTGAGATAGCTGAGCATGCCTGCGTGTCCAACCCATGTGCCAATGGTGGCACTTGCCATGAGGTTCCGTCTGGGTTTGAGTGTCAATGTCCTCCAGGCTGGGAGGGTCCCACCTGTGCTAAAGACATGGACGAGTGTGCCTCGAGTCCCTGTGCTCAAGGAGGAACCTGTATCGACCTGGATAACGCCTTCGAGTGTCTCTGTCCTCCGCAGTGGGCTGGGAAGACCTGCAAGATTGATGTAAATGGCTGCCATGGACAATGCCAGAATGGCGCGACCTGCAAGGAAGGGGCACTGGGAGGATACCACTGCCAGTGTCCACCAGGCTTTGTAGGCACCCACTGTGAGATCCAAAGGAGCAAGTGTGCCAGCAGCCCCTGTCAGAATGGTGGTCGCTGTCACGAGGTGGGGGATAGCTTCGTATGCGAATGCATGCCTGACTATGCTGGGATGCTGTGTGAGGTGCAAAGCCATTGGAACTCAAACCTTTGTGAGCCCAACCCATGTAAGAATGAAGCAACCTGCCACAGTATGCTGGGAGATTTTTACTGCGCATGCACTGAGGATTATGAGGGAAAGACCTGTGCGGATCGCAAGGACCACTGCAGGACTGCCCCCTGCCAGGTGATTGACAGCTGCACAATCACTGTGGCAAGTAACACCTCAGTCGGAGGCGTGAGACGTATCTCGTCCAATGTATGTGGGTCTCATGGCCACTGCGTCAGTCAGCCCAGCGGCAACTTCACCTGCACCTGTGACCCTGGCTTTACTGGCACTTATTGCCATGAAAATGTGAATGACTGTGTGAGTAGCCCATGCCGCAATGGCGGGACCTGCATCGACGGTGTCAACTCTTTCCAGTGCTTCTGTCCTGATGGCTGGGAGGGCAAACTATGTGACCTCAACGTGAACGAGTGCAGCAGAAACCCATGTAAGAACGGTGGCCGATGTCAAGATCTGGTCAATGACTTCTACTGCGAGTGCGCTGATGGCTGGAAGGGTAAGACATGCCACTCGCGCGAGAGCCAGTGCGACTCCAGTACTTGTGCCAACGGGGGCACCTGTTATGACCATGGAGACACCTTCCGCTGCGCTTGTCTGCCTGGCTGGGGTGGGCGTACCTGCAACACAGCAAAGAACAGCACATGTGCTTCCAGTCCATGTGTTAATGGAGGAACGTGTGTGGGAGGTGGTGACACGTTTACCTGCATTTGTAAGGACGGCTGGGAGGGACCTACCTGTTCACAGAACACCAATGACTGCAACCCTCACCCTTGCTATAATGGAGGAATCTGCGTGGATGGTGTAAACTGGTTCCGCTGTGAGTGCGCCCCAGGCTTTGCCGGGCCTGACTGCCGCATCAACATTGATGAATGCCAGTCATCGCCCTGTGCGTATGGAGCTACATGTGTGGATGAGATCAATGGCTTCCGCTGCATATGTCCACTCGGACGCTCTGGACCTCGATGCCAAGAGTTCATAGGCATTGGGAAGACGTGTCATTACACTGGATTGCAGTTCCCTCATGGCAGCCGCTGGGATGAAGACTGCAACACCTGCCAGTGTATTAATGGCAAAGTAGAGTGTACAAAGGTGGTGTGTGGCAGGCGGCCATGCCTACTGCCAGGAGCCCCAGGGAGAGAGCATCACGTCTGTCCAGCGGGTCGCGAGTGCCTAGAGCACGGCTTCCTCACCTGCCTCTCTCCCCCATGCCACCACTGGGGCTTCTGCTCAAGTCCTGACACCCCACCAGCTGTTCACACCAAGTGTGAGCCCAATACAGGCTACCTGGGCAACAGCTGTGCCCGAATTACACTCATCTTCAACCGGGACAAGCTACCCACAGGTACGACAGTGGAGAATGTATGCTCAGAGCTGAGGTACCTGCCTGCTACACGGAACCTTGCCAAAGATGATGCCCTATTGGTTCTCTGTGAACTCTCCTACTCCAACCAGGATGCAGTAGAGGTGGCCATGTCCTTCCAGCAGGATGAGCAGCCTGACCACAGTCGGATCCAGGAGGCGGCCAGCACCGTCGTCAGCACGCTGTCCAAGCGCCACAACAGCACCATCATGCTGGCTGTCATCGAGGTCAAAGTGGAGACGCGGGTCGTGCCTCAGTCTGTGGATTATCTAGTGCCTGTGCTGTGCGTGGTcttctgtgctctctgggtgttCTGCGTGATCGTGTGCGTGTGGTGGACGCGTAAGCGACGAAAAGAGCGTGAGAGGCGCGAGCATGCACCTGTGGAGGAGAGCGTCAACAACCAGTGGGAGCCACTGCGACCAGTGACACGGCAGCAGCACAAGGACAACCGGGATGCTGAATACGAGCGCGCCAAGCTGATGGGCAACACCGAGCGGGCGTGCAAAGGCAGTGAAGACGACCAGCTGGAGGAAGAGGATGGGGAGGAAGAGGAACTAGAGCTGTGCGAGGAGTGGTGTGGGACAGAGGGCGGCAAGAGGCCCATCCAAAAGTACTCGAAAGCGACAGTGCAAGTGAACAGCGAGGTGATCTGCACCACACGCAGCAGCAATGCGCCCCTCAAAGCGCCTCACCGGACAGCCCACAGCCACAAAGACAACCGctggaaaaacacaaacagcgcCACTGGCCAAGACCCCAAAGAGCTGTATGTATAGACGCTATTGCACAGACCCGGGCACAGAGAGAGGCTTTTTTTCTGACGAAGAAAACAACAGACTGTtgagtttgagagagagagagacggagaactttgtttgtttgtttttttccctcttcacctttttatttaatgtgctgAGATATTTTGagtctgagattttttttcccccttgaaacattttttttttaatttctgatgtacagatgAAGTGAATTTGTTTTACTTTATAAGAATAGGTGAAGAGATGGccacttttttttcaaaatatactGCTGAAAGAAATTGAGCAGGAAatcgaggaaaaaaaatataaactgtgTAAAGACTTTTCGTTGCTGTTTACAGATGattctggttttgttttattgtgagTGGCCTGTATTTTGGATGGGGCTGCCAGTGAAGTGCACTGGCCCTGTGGACAGAAGTAAGAACTCCTTGTGATTTTGCCCTCATTCATCTCGTCACCTCTCCTCACTCCATGCTTGCCTTACTCAGCTCGCAGGTCGGTGCCTGCGAAGTGGCCTTGTTTTTCTCTTGTGTCTGTTGTCTTGGCTGAACACTCCTTAAATGATAAAGGATTGCAGTATTTTGAGTTGGTAGCAAGTGCCTTCTGACAAGCCTGTTGCATCTCTCGCTGCCGAGGTCAACCCCAATAGATCACAAAGGGAGCTTGTCTCCCATTTTGTACCACCGAGGTATTtgatcaaagaaagaaagaaatctgtaaatatttgtacataGTAAAGGAGTCGCTGTGTATATTTGAATTTAGTAAATTAAGACaagtcacatttttttattactattataattatgattgaaattattattaatattattattgttattattatgattatttgggttttttttgtttgtttgtttttttacaatgCCATTCCTTTTATTTATGCCAGTTGACATAGGCAGGTTTTATACAAGTATACAGCATCCCACAGTCAGAACAGTAATGTAATCAaagttcatctttttttatgttgttgatttttgttttcacattgACACAAGTAATTCTTTAAATTTAGGTGGTATATTGTGGCGTGTGTTTTTGCTTCCGTAACATCCTCTGTGCCCCTTTCAGCATCTGTCCTTCCTTGCTGTCATAGAATTCTGGAAGCCTGCAGAAATTCCTGATACATGTCAAGGCCTATGGGGCCAAACGCGCCTTTGCAATGGTGCAGTTCTCTCCTACGATGTGAAACTGTGTTCTTGCTCCATCTGATTGctcctgggttttttttcttttcttttcttttggtttGAGGCTTCATGAAGGGAACAAATTTCGTTGTAAAGCAGTTTGTGTTTGAGGTACCAACTCCAAACAAAAATGGATTACCTCAGAagtggctgattttttttttttttttttttttttttttttcccttttattttcattttgaatattACTCTTGTGGGTGGCTACTTGCTGCCACATATGGGAGgattcaaaataaaagaattgaaATATCCTGAA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0048793 pronephros development biological_process
GO:0031016 pancreas development biological_process
GO:0001889 liver development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580121.1 lncRNA upstream 140656 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 251607 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 251607 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 306679 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 420882 7666919 ~ 7667805 (+) True G291582
TU345697 lncRNA downstream 358 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 183579 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 339174 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 345284 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 363306 8488969 ~ 8534500 (+) True LOC113545369
XM_026944614.2 mRNA upstream 14243 8043386 ~ 8074444 (+) True nudt14
XM_026944508.2 mRNA upstream 142875 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA upstream 142875 7885793 ~ 7945812 (+) False brf1b
XM_034313725.1 mRNA upstream 256661 7813619 ~ 7832026 (+) False ppp1r13bb
XM_026944455.2 mRNA upstream 258479 7785422 ~ 7830208 (+) False ppp1r13bb
XM_026944387.2 mRNA downstream 47499 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 47499 8173162 ~ 8190581 (+) False esr2a
XM_026944388.2 mRNA downstream 47501 8173164 ~ 8190581 (+) True esr2a
XM_026944386.2 mRNA downstream 49848 8175511 ~ 8190581 (+) False esr2a
XM_034313589.1 mRNA downstream 170951 8296614 ~ 8305599 (+) False LOC113545195
TU345691 other upstream 14250 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 199851 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 200607 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 201088 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 203971 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 362984 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 766005 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 867850 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 948365 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1778087 9903750 ~ 9950731 (+) True G293016

Expression Profile