RNA id: XM_026944508.2


Basic Information

Item Value
RNA id XM_026944508.2
length 3230
RNA type mRNA
GC content 0.47
exon number 20
gene id brf1b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7885793 ~ 7945812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCAGTTGAGAGTCAAAACAAGCTACTGAgagtaaaacaaaatgtttcagcAATACTGAGTTATTTTGTTCTCAGTTTGTGCAGCATGGAATAGCATTGCGGATAACTTGCTTATCAATAAAGTCTCTCGAAGACACTGCTTTGTAGCGTTTACTTCTGTGCTTGGACAGCCCACAGCCACTGTGTGTATCTACTTAGATAGTGTACCAGCATCTCCTCGGAGTCAGGATGAGTGCTAGGCAGTGTAAGAACTGTGGTGGAGCGGATATTGATATAGACCAGGCGCGTGGAAGTGCTGTGTGCACCGCCTGCGGCTCTGTGCTTGAGGACAACATCATCGTGTCTGAGGTGCAGTTTGTGGAGAACAGTGGAGGAGGCGCGTCTGCTATCGGACAGTTTGTGTCTGCTGATGGTCCTGCAAAGGCCCCAGTGCTTGGAAGCGGCTTCCACACAAGTCTTGGGAAGGAGTCACGTGCTCAGACACTTCAGAATGGGAAACGGCAAATACACAGCCTGGGCAGCCAGCTGCAGCTGAACCAGCACTGCCTAGACACAGCCTTCAACTTCTTTAAGATGGTGGTGAGCAAGCATTTGACAAGAGGGCGCAAGATGGCCCACGTCATAGCTGCCTGCCTCTATCTGGTGTGCCGGACAGAGGGCACTCCCCACATGCTCCTGGACCTGAGCGATCTCTTACAGGTGAACGTGTATATCCTGGGAAAGACTTTTCTGCTGTTGGCCAGAGAACTCTGCATTAACGCGCCTGCTGTCGATCCATGTCTGTATATTCCACGCTTTGCACACATGTTGGAATTTGGAGAAAAAACCCATGAAGTGTCCATGACTGCTCTGAGACTGCTGCAGAGGATGAAGAGAGACTGGATGCACACAGGACGCAGACCATCTGGACTCTGTGGCGCAGCTCTGTTGGTGGCGGCCCGCATGCATGAATTCCGCCGCACGGTGAAGGAGGTCATTGGTGTGGTGAAAGTATGTGAGGCGACTCTCAGAAAGAGGCTGACAGAATTCGAAGACACACCCACCAGTCACTTGACGATTGATGAGTTCATGCGAGTGGACCTGGAGGAGGAGTGTGATCCCCCTTCTTTCGTTGCTGGTCAAAAGAAGTTAAAGATCCAGCAGctGGAACAGGAGCTGGCCAGGAAGCTTGATGAATATCAAGGTGAGATCAGCTCCTATCAGGATGAGATTGAGACAGAACTGGAGAACAGCAGGCCTAAATTGAGAGGAATTTATGCCATGTATGCAAGAGAAGaCACCAATGATGGCAGTCTGTCTCTGGTGTCGGACCTCGCGGGAGATGAAGACATGGAAGATGAGGAGATGGAGGCTGCAGCTCAGCACCTCAGTGAGGACTTCATCAACCAAGTGTTACCTGAACTGGAGCAGGGACCTCAGGGGGGCACAGAGGCACAGGAGCAGGGCAAAGAGGTAGCAGAGCTACCTAGTGGCTCCACCCATGTGCCACTGACTTCACTGCTTGGCCCGCTTCCCAGCGCTGCCAGCCTTGGCCTCACAGACTCTATCCGCCATTGCATGACTGAGGAGGAGGCGGATGAGGACAAGTCAGATAATGGCGAACTTGATCTGGAAGGCATCGACGAGGATGAGATCGAAAAGTACATTCTCAATGAGAAGGAGGTGCAGGCTAAGACAGAGCTGTGGATGAAGCAAAATGAGGAGTATCTAAGGGAGCAGAAAGaaaaagaagagaggatAGCTAAGGAGAAAGAGCAAGGGATCTATAAGGAGAAGcccaaaaaaacatccaaaaggCGAGAGCCCATTCGGGCCAGCACTGCAGGAGAGGCAATAGAGAAGATGCTGGAACAGAAGAAGATTTCAAGCAAAATTAATTATGATGTACTGCGAGACCTGAACAGCAAAGGCAGCAGCAGCCCTGCACATAAGACAGAGGAAGAGTCTGGTATTGTCCCTGGACGTAAGAAGCTCACCCGCCGCAAGAAACAGCCCAACAAGAGCAATCTGGGTCTGGCCAAGCCTGCAAGCCTCATGGGGAAAAGGCTCCGCCCCCTTATATCTTCAAATCCCAAGAAGAAAAGAGCAGCTACACAGATTGTGCCCAGTGCTGTGATGCTGCCGCCAGTGACCCCTGAGACTCCGCCAGCCCCTACTCCTCCTCCAGTCATAGAGAGTGGCCCTGTGACATATGAGGAGCCCactgaggaagaagaggacGAAGAAGTGGAAGAGCCCTGTGTCAGTGCTATGAAGCTTATGGGAGGAAACGAATATGGCTGTGAAGCCGAAGAGGAGGAAGTTTTTTAATGCACAGTGTTTGTCTTCCCGAAAACAAGCTATGATTTCGTCAGCATCTGAGCGATGTCTTCTCCCCATgtagagacaggagagagagaaaaacagggcTTGGGCATGTGTGCTATTGTCATTACCATGAAGGAACATCTATGTGTCAGTGAACTTGTTCAACTCCTGCAGCATCTGAGACAGTAGAGGGACATCTGAGGGTGTTTGTGCGACATGTGGGAAACACATGACTGAAGACAAGAACTGTAGATACTTGAACTATTAGACACATGCTAATCCACCAGATGTGCATTGCTGTAATTACGTATAGGAAAACTGCTAAACAAACCATACATGTGCTAAGAGGAAACCTAATAAGTTGTTGAACATCTAATTATGTTGTGATGCAGCTTTAGAATCCGCCGATGTAGCATTCATTTAGGAATTAAGCCCACTCAGGTGATGTTTGTATGATCAGTGACAGATTTCATCCTCATTTTATTCACACTTCTGTGTAATATAATAgttgtttctgatgtttctAGGTTGACagcaattgttttaaaaatgcttgAAGGTGCTCTGATAATAGATGTcatattttgaagaaaaaaattttatgttatgtaatggatttatttttgtgtcGTTTTAGTCTTGTCAGAGTTTTAGCTTTGTTAAACTCTATAATATTGGCCCTCATGTTAGCATATGAGTGCACATATGTAtaaatttgtataaatgtaCATAATACCTATTGAAGTTTTGTCACTTGCTTCGTTTCGATGAAAATGCAATGTTTccgttttaatttttaattacatatgtTGATGTAATGTATTATGCATCACTGTTTGTTACTGTGATATTctcctgttgttgttttttctgctgGCTACCTTGAAACCCTTTAGGTCTCTATTAAATTTCATAAGAAACA

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345543 lncRNA upstream 48713 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 48713 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 103785 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 217988 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 219784 7665129 ~ 7666009 (+) True G291581
XR_004580121.1 lncRNA downstream 140 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 180209 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 363430 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 519025 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 525135 8470947 ~ 8473728 (+) True G291976
XM_026944452.2 mRNA upstream 53767 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944454.2 mRNA upstream 53767 7785422 ~ 7832026 (+) False ppp1r13bb
XM_026944453.2 mRNA upstream 53767 7785422 ~ 7832026 (+) False ppp1r13bb
XM_034313725.1 mRNA upstream 53767 7813619 ~ 7832026 (+) False ppp1r13bb
XM_026944455.2 mRNA upstream 55585 7785422 ~ 7830208 (+) False ppp1r13bb
XM_026944614.2 mRNA downstream 97574 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 142875 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 142875 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 227350 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 227350 8173162 ~ 8190581 (+) False esr2a
trnaa-cgc_6 other upstream 1077 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 2504 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnac-gca_25 other upstream 296354 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 866107 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 2084100 5735473 ~ 5801693 (+) True usp24
TU345691 other downstream 97587 8043399 ~ 8074437 (+) False nudt14
TU345969 other downstream 542835 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 945856 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 1047701 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 1128216 9074028 ~ 9160901 (+) False LOC113545247

Expression Profile