RNA id: XM_026944520.2


Basic Information

Item Value
RNA id XM_026944520.2
length 2195
RNA type mRNA
GC content 0.49
exon number 11
gene id prpf39
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9618830 ~ 9626110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGcgcagtgcgcatgcgcgggACGGTCTTGCCCTTGTGTAGCTGCGCTGTGGTGTGAGGAAGTGTAGCATGAGCGCTCGGTACCGCGACCACATGTTGTTGAACAGATAACTTCAAAAGTTGAGAGAAATTTTTCTGCAAACAAAATTTCATGGAACAATCTGATCCACAGCTCTCGGACGAGGCCATGACGGGGATGGTTGGTGCAGATGCCTCCGACAATGGGAATGCTACTGCTATGGAAGGTGCAGGAGACAGCTTCGTTCCTGACCTTCCTAACATGGCTCCTGATGCTCAGTGGACAATGGACCAAGTACCTGACACTTTTGGTGGTCTTGCAAATCAGCAGAACCCAGAACAAGGCCAGGTGGAGCAGTACGAACAGTACTTGGTAGATGGGCAGTCACAGTCTTCAATGGGGCAAAAATCTGACCTTTCCGAACAGCACGATAATTCAACATATGTTGATGGAAATCAGCCGGAAACAAACGGACAGGCTGCAGAGGGTCATCTCAAAGAGTCTGAGTTGAGCTCAGAAAAGCAGGCTGAAACAGGCAGTTCGGACAGCCCAGCGAATATGGAGCTTGAGGATGGGTCCAAAGAGGGAAGTGAAGTAGATGCCTCACTGTCAAAACCTTCGCTCCCCACTGATTTCGACAGGCTCTATAAGGTAGTTGAGGATGATCCTGAGGACTTTAATGGCTGGGTCTACCTTCTGCAATATGTTGAACAAGAGAATCACCTGTTGGCTTCGAGAAAGGCATTTGATGCCTTTTTTCTACGCTATCCCTATTGTTACGGCTATTGGAAGAAATATGCAGACATAGAAAAAAAGCATGGCTGCATACAGGAGGCGGATGAGGTGTATCGAAGAGGTCTGCAGGCCATCCCACTCAGCGTTGACCTTTGGCTTCATTATATAACTTTCTTAAAGGAGAATCAAGACACTAGTGATGGAGAAGCTGAGAATCGCATACGAGCTGCCTATGAGCATGCAGTTCTTGCTGCGGGTACAGACTTCCGGTCAGACCGTCTGTGGGAAGCTTATATTAGCTGGGAGACTGAGCAGGACAAGTTGGCCAATGTTACAGCAATTTATGACCGTGTCCTGGGTATTCCTACTCAGCTGTATTCCCAGCACTTCCAGAGGTTCAAGGATCATGTGCAAAACAATAATCCCAAGCACTTCCTGTCTGAAGAGGAGTTTGTTCAGCTAAGGTTGGAACTTGCAGCTGCCAATAAGCCCagtggagagggagaggaggaaacCCCCAGTGAGGAGCTACCACCAGGCACAGAAGACCTTCCTGACCCAGCAAAGAGAGTCACAGAGATCGAGAACATGCGACATAAGGTGATCGAGACGCGTCAAGAGATATTTAACCACAATGAACATGAAGTCAGCAAGCGCTGGGCCTTTGAAGAAGGGATCAAGCGTCCATATTTCCATGTGAAAGCCTTGGAGAAGACTCAGCTTACCAACTGGAGGGAGTACCTGGACTTTGAGCTGGAGAACGGGACACCGGAGCGTGTAGTGGTTCTGTTTGAGCGCTGCCTGATCGCCTGTGCCCTGTACGAGGAGTTTTGGATAAAGTATGCCAAGTACCTGGAGAGCTACAGCACAGAGGGAGTGAGGCACATCTTCAAGAAAGCATGCACCGTCCACCTGCCAAAAAAGCCTACCATCCATGTTCTCTGGGCAGCTTTTGAGGAACAACAAGGGAACATTGATGAGGCTCGAGGCATCCTGAAAAGTCTAGAGGAGGCAGTTCCTGGTTTGGCCATGGTGAGACTACGTCGTGTGAGCCTTGAACGTCGCCACGGGAACTTGGATGAAGCAGTAGCTCTTCTGGAGGACGCCATCAAGAATGCAAAAAACACAAGTGAATCGACCTTCTTCTCCGTGAAGCTGGCTAGGCAATTCTTCAAAGTACAGAGGAGTGTTGGAAAGGCTAAAAAAGTATTGCTAGAGGCCATTGAAAAGGATGAGGTAAAATGGCTTTTCACAAGACTTGAATCTACACCTTCATCATCTGTCACATAACTGAAGAGATTAACAATGATGACAGACCAGTCCCAAGCTCTACCTGAACCTGCTGGAACTGGAGTACAGTGGAGACGTGCAGCAGAACGAGGCAGAGATCTTGGCATGCTTCGACCGGGCGCTCAGCAGCACCATGCCGTTAGAGGCGCG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346860 lncRNA upstream 2239 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 6218 9611988 ~ 9612612 (+) True G292756
TU346877 lncRNA upstream 30927 9587700 ~ 9587903 (+) True G292771
TU346871 lncRNA upstream 64023 9554437 ~ 9554807 (+) True G292765
TU346709 lncRNA upstream 203254 9414551 ~ 9415576 (+) True G292643
TU347065 lncRNA downstream 243299 9868149 ~ 9868609 (+) True G292929
TU347253 lncRNA downstream 411601 10036451 ~ 10038355 (+) True G293095
TU347278 lncRNA downstream 438915 10063765 ~ 10064011 (+) True G293110
XR_004580103.1 lncRNA downstream 573999 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 912114 10536964 ~ 10537640 (+) True G293350
XM_026944540.2 mRNA upstream 41272 9574351 ~ 9577558 (+) True LOC113545275
XM_026944522.2 mRNA upstream 66889 9542408 ~ 9551941 (+) True LOC113545265
XM_026944524.2 mRNA upstream 66889 9542408 ~ 9551941 (+) False LOC113545265
XM_026944530.2 mRNA upstream 113704 9495245 ~ 9505126 (+) True entpd5b
XM_026944433.2 mRNA upstream 144666 9463981 ~ 9474164 (+) True yy1b
XM_026944547.2 mRNA downstream 2728 9627578 ~ 9631109 (+) True faua
XM_026944552.2 mRNA downstream 42831 9667681 ~ 9672528 (+) False ypel5
XM_026944551.2 mRNA downstream 42842 9667692 ~ 9672528 (+) True ypel5
XM_026944628.2 mRNA downstream 292515 9917365 ~ 9941395 (+) False mylk4b
XM_034313885.1 mRNA downstream 292515 9917365 ~ 9937952 (+) False mylk4b
XR_004580138.1 other upstream 457929 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 621834 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 727090 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1109347 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1544393 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 278900 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 534105 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1394066 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1519037 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1520089 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile