RNA id: XM_026944551.2


Basic Information

Item Value
RNA id XM_026944551.2
length 1366
RNA type mRNA
GC content 0.43
exon number 3
gene id ypel5
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9667681 ~ 9672528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGACGCAACACCGGATGTTGCTATAGGCTGCGGAACAGCTGAGAGCATATCAACACAGCACCAAAACAGACGGACGCTTTGAAAGAAAGGtttgggaaaaaacaaaacaaaacaaaacaacattgaCATAGAAAGAAGAACCATCGAAAAAAATCGGGTAGAAAGCCTTGTCAGCCAAAACGGTTCTGTTTTAAACGAACGGATTAAGTTacaagaagaacaaaaaacGCACGATGGGCCGTATCTTCCTGGACCACATTGGAGGCACTCGCCTCTTCTCATGTGCTAACTGCGACACAATCCTGACCAATCGCTCTGAGCTCATCTCCACACGCTTCACAGGAGCAACAGGCCGTGCTTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGTGATGTGCAGGACCGGGTGATGCTCACAGGAAGGCACATGGTGCGTGATGTCAGTTGTAAAAACTGCAACAGTAAGCTGGGCTGGATCTATGAGTTCGCCACTGAGGACAGTCAGCGCTACAAAGAAGGCCGTGTCATCCTAGAGAGGGCACTTgtaagagagagtgagggattCGAGGAACATGTGCCATCTGATGCCTCCTGaatctctcttctcttttatctctctctctaaatctcTCTCTGTTATGCTGCTCATCTCAGTCACTGCCGTGTCCGAACACGATCTGAACATCTGAACAACGTATCCGCTTCTCACGAGCTGGTCCGGCCTTGCATAGAGACTgctaataaacaacaaaaccGATTCAGCAGCCCACCCATGGCTCTGTAAAGCAACAAACCAATCCAGCTGCCCATGTATGGCTCTATAAAAAAGCAAACCCAGCCCCCAATCCAGCAGCCACTCTGTAGATCAgtaaagcaagcaaacaaaaaaaatctggcagCCAGTCAAAGTTTATTAGGTATACTCTTGCAATTTAGGCTTTATAGTTCTGGATCTGAGCCAGCTATTAATGATTAGAGCAGGTAGAGTTATCTTTGTGAGGGATGCATTTGCTAGTTCGGCAGAATGCAATGTCAGTTTTTGCCAAGATGCTGATGTCTCTGATTTCATTTTCTCAGAGCATGTCCTATTTCAGCCCTCAAATATAGAGAGTGACACAAGGGGAAGATAGAGTGACAATGGTCCCttgctatttatatatatatattgttttggAATTGGTGGATAGTAAGAACCCTATGTTAATGATAAACTCAGTCCAGCACCATTTTAATTAGCGTTatactttttcttgtttttagttGAGTgtatgtattgtttatttttttttcttttcctaagacatgatgataaaaatgtgttcatttgatCTTAATAAAGTAAATGGTCTTGCTCAAGCA

Function

GO: NA

KEGG:

id description
K23339 YPEL5; protein yippee-like 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346860 lncRNA upstream 51101 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 55080 9611988 ~ 9612612 (+) True G292756
TU346877 lncRNA upstream 79789 9587700 ~ 9587903 (+) True G292771
TU346871 lncRNA upstream 112885 9554437 ~ 9554807 (+) True G292765
TU346709 lncRNA upstream 252116 9414551 ~ 9415576 (+) True G292643
TU347065 lncRNA downstream 195621 9868149 ~ 9868609 (+) True G292929
TU347253 lncRNA downstream 363923 10036451 ~ 10038355 (+) True G293095
TU347278 lncRNA downstream 391237 10063765 ~ 10064011 (+) True G293110
XR_004580103.1 lncRNA downstream 526321 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 864436 10536964 ~ 10537640 (+) True G293350
XM_026944547.2 mRNA upstream 36583 9627578 ~ 9631109 (+) True faua
XM_026944519.2 mRNA upstream 41582 9618836 ~ 9626110 (+) True prpf39
XM_026944520.2 mRNA upstream 42842 9618830 ~ 9624850 (+) False prpf39
XM_026944540.2 mRNA upstream 90134 9574351 ~ 9577558 (+) True LOC113545275
XM_026944524.2 mRNA upstream 115751 9542408 ~ 9551941 (+) False LOC113545265
XM_026944628.2 mRNA downstream 244837 9917365 ~ 9941395 (+) False mylk4b
XM_034313885.1 mRNA downstream 244837 9917365 ~ 9937952 (+) False mylk4b
XM_026944627.2 mRNA downstream 251975 9924503 ~ 9941395 (+) True mylk4b
XM_026944678.2 mRNA downstream 273262 9945790 ~ 10025924 (+) True gmds
XM_026944679.2 mRNA downstream 273262 9945790 ~ 10025924 (+) False gmds
XR_004580138.1 other upstream 506791 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 670696 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 775952 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1158209 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1593255 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 231222 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 486427 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1346388 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1471359 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1472411 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile