RNA id: XM_034313790.1


Basic Information

Item Value
RNA id XM_034313790.1
length 3552
RNA type mRNA
GC content 0.45
exon number 11
gene id mtmr9
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6987109 ~ 7003630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatatgaggGTCTGCGGAGAATGGAGTTTGCGGAATTGATAAAGACCCCCCGGGTGGACGGTGTGGTCCTGCACCGTCCCTTTCTCCCCACCGTGGAGGGAACTCTGTGTTTAACCGGCCACCACCTCATCCTGTCCTCACGCCAGGACAACACCGAGGAGCTCTGGCTGCTCCATGCCAACATCGACGCTATTGAGAAGAGGTTTGTTGGCTCTCTTGGCTCGATTATCGTGAAATGCAAGGACCTGCGCATTATTCAGTTGGACATACCTGGCATGGAGGAGTGTCTCAACATTGCTAGCTCCACTgaaGCGTTGTCCACACTCGACTCAGTCTCCCTGATGTATCCTTTCTTCTACCGGCCCATGTTTGAGGTCATTGATGATGGGTGGCACTTGTTCTCACCAGAAGAGGCCTTCAAAGATCTGGAATCGATGACAGATGAGTGGAGACTTagtgaagtgaataaaaacTTCATTGTTTGCCCCTCCTACCCTTCACTGGTGGCTGTACCCAAGGATATAGATGATGACACTCTGTGCAAAGCTGCTGCTTTTCGACACGGCGGACGCTTCCCAGTGCTCAGCTACTACCACAAGAAGAACGGCATGGTGATGATGCGAGCAGGGCAGCCTCTGATTGGCACAAATGGACGCCGCTGTAAGGAAGATGAGAAGTTGATCAATGCTACGCTCCGTGCAGGGAAACGTGGTTACATCATCGACACGCGCACTGTTGCTGTAGCGCAGCAGGCTAAGGCCCGTGGTGGTGGGTTTGAACAGGAGGCGAACTACCCGCAGTGGAGGAGAATCCACAAAGCTATTGAGAGGTCCAATATTCTACAAGAGAGCCTGATAAAGCTGGTGGAGGCGTGTAATGACCACTCGAACAGCATGGACCGCTGGCTTAGCAAACTGGAGGCTTCCAACTGGCAGAGCCATGTAAAAGAGATCCTCACCACTGCCTGCTTGGCTGCTCAGTGCATTGACAGAGAGGGTGCATCAGTGCTAGTCCACGGGACAGAGGGCACTGACTCCACGCTGCAGGTCACCTCTTTAGCCCAGATCATCTTGGATCCAGGCTGCAGGACAGTCCGCGGTTTCCAAGTCCTCGTGGAGCGTGAGTGGCTGCAGGCAGGTCACCCGTTCCAGCAGCGCTGTGCCCAGTCTGCGTACTCCAACGGAAAGCCGAGGAGTGAAGCACCTGTGTTCTTGCTCTTCCTGGACTGTGTGTGGCAGATCCTGCGCCAGTTTCCTTGCTCCTTTCAATTTAATGAACACTTTCTGGTCACGCTGTTTGAACACGCTTACGCCTCCCAGTTTGGCACTTTCCTGGGAAACAGCGCTGCCGAGAGGGTGAAGTTGGAGCTCTGTCAAAAGACTGTGTCCCTGTGGTCATGGATGAACAGGCCTCAGGAGCTGGAACGCTTCCTTAACCCTCTCTATGAGGCCAACAGTCTTGTGATCTGGCCATCTGTAGCCCCGCAGAGTCTGCTGCTGTGGGAGGGTGTGTTTCTACGCTGGAATCGCTCAACCAAGTGTCTGGACGAGGCGTACGAGGAGATGGTCCATATTATTGAATACAACAAGGAGCTACAGAATAAAGTGAACAGCCTCAGGAGACAGCTAGCTCAACTAGAGACAGAGGACGGCCCTCTTCAGAGTACATAGACATGCATCTTGACCTTACCGAGAATTCTGAGTCTTTCAGAGTCTTGGAGTTCCTGTTCGGCACTACTGAAATTTATTCTGACCCATGCATGTAtgtacacatgtgcacacattcacactcatcaCGTCTGCTCAGTCAGAGTCAGACTGTCTTAAAGTACTCCACCTATGTGTAATCattgcttgttttcttttttttcactgataGTTCTGTTTGCCCTTCACTCCGTGCCACTTCAGGtgcttacacacactcaaaaaaaagGCTATGATAAcattatgcatatatatatatatatttgtggcTATTCAGCAACTTTCATACACTAAGTGAAACTTACTGAGACAAGCGGCCAGTTACTTGACATGTAGGTGATTGTATGTGACCAAACTGTGcaattattttgacttttttcacAGTAATGGAGGCCTGTGATGGCCAGTGTTTGCCCAAAAGCAATTTGCTCTGAATTCTTTTGTTGTAGAACAGTAGTGAATAATTTGTCAGtgtaaagaaaattattttataaggGAAATGATACTTGCTTTAGTTTGGGAAGCAGGAACTGTACAGTAAAAACCCTGTGGCTTTTGCACCGTTTGGTTCAATGTGCCATGGTGTTCTAAAGCATATACATGGTGTAGCAGTAATCAGGGTTAAGCAAAGCACctctgaaaacaaaatgtgttatatTGATTCAGAATTCCTGTGTGTTGGTTGCAATTAACATTCAATGCTTTCTTGTTATTATTCAGTTTGTTGCAGTGTAACTCTAAGACATGGCCACAGATTTTGACACAGCCTTGCAAGCTATCATTCTTCTTCTTAGAAACCCtccttaaaataaagtaaaatataaaagtaaaagcagtaaaatatctaaaacaaaacaaaaataaacatatagaCATTCCCTACTGTTGAAATGTAcactaaaaatctaaaaaccaTACTTAAGTGCGAGACCCTTGTGTCTGCATACGGTATTGATTGTGTCTGTGCTGTAGACGTTACACCTGCATTCGATTCCAGATAATGGTTTAAAACCAGACACTTAAAATACTAAGCTATTTTAGGCATGTGTGTCATCACCGCCTATATGGAGAACACATCATTTTTACAGTTAGGCCATTTTGCTTAGCAAAATGTGCCACTCTGATATTACCCACACCCACATGAGTGCAGTCTGGGTTGATCTCAGAATTCTGTCCCTGACTTGTCTGGCTTCAAGGGCAGaatgtgaaatgaaaactgCACTGTAATGCTGATGTGAAGGCTGGGCGTAGTGACTCATTCCAGACGTTCATCCAgcctaaaaaaaatcagcactgGTCTCATGATATATACCACTGAGTCCGCTGCCTTCCTTATTATATCCTCCAGTGTGGAGTTACATGTATTTAAATTCGCACAGAGTGAGGTCATAGGGTACAGAACACTGTCAGGACAATACTGTatgtttcacatatttattcatctgtAGCTGAGTAACTCCTCTAGTGTTTTGTAGTCAGATTGTTACCATCTTACATCTTATAGGATTCATTGTGGCAACAGCTGGCGACAGGTTTCGGACTGGCATGTTAACCAAATAATTTGTGTTGTACTGTACTCATTCACTGTTTACCCAAAATATGCTTTTTCTGTCagtaaaaatttgtttttataaatgtctCTTCAGTGCAATGCTTTACTGAGAAAGTGAACATGCTCTTTGTACCTAATTTCACTGgttatatttcagtgtttaatgcaTATCACATGTTGATGTACATTAAGTGTAGATTTATGTTATAGTCTTTGGGCATTAAAATGTTCTGTAGGTGGTTtcatataaaatatgattaaacaaaCCCTTAATAAAGTTATAACATGCTATTA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344857 lncRNA upstream 6230 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 49415 6939191 ~ 6939619 (+) True G291058
XR_004580109.1 lncRNA upstream 55174 6930369 ~ 6933860 (+) False LOC117599731
TU344873 lncRNA downstream 54753 7058383 ~ 7058583 (+) True G291109
TU345070 lncRNA downstream 216676 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 257420 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 400798 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 485678 7489308 ~ 7520858 (+) True G291423
XM_026944596.2 mRNA upstream 77846 6905521 ~ 6911188 (+) False fam167ab
XM_026944595.2 mRNA upstream 77846 6905526 ~ 6911188 (+) True fam167ab
XM_026944472.2 mRNA upstream 95681 6884303 ~ 6893353 (+) True eif5
XM_026944427.2 mRNA upstream 121003 6850356 ~ 6868031 (+) True LOC113545215
XM_026944567.2 mRNA upstream 140501 6833386 ~ 6848533 (+) True tnfaip2a
XM_026944691.2 mRNA downstream 9112 7012742 ~ 7019686 (+) True tdh
XM_026944650.2 mRNA downstream 20377 7024007 ~ 7049333 (+) True pinx1
XM_026944323.2 mRNA downstream 50328 7053958 ~ 7057627 (+) True sox7
XM_026944570.2 mRNA downstream 92511 7096141 ~ 7106016 (+) True blk
XM_026944569.2 mRNA downstream 92511 7096141 ~ 7106016 (+) False blk
XR_004580141.1 other upstream 1187341 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 2009634 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 9112 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 585738 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 879588 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 881015 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 883898 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile