RNA id: XM_026944559.2


Basic Information

Item Value
RNA id XM_026944559.2
length 1196
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC113545285
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4823038 ~ 4831944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aTTGGCAAAAGAGGGTAAAGTTCAAGCAGTTGctttgtgcaaaagtttgttaCATGGACTTTTTATGACAgaacataacacacaacagttaACAGGTAAAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCAATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGGTATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTTGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTTCACGTCTGAGCGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGTTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGGATGCTTGACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTATAACGGAAATGCAGGCAAGATGGGCCGCCCGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343551 lncRNA upstream 8545 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 8545 4812169 ~ 4814796 (+) True G290009
TU343547 lncRNA upstream 16761 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 20313 4802813 ~ 4803028 (+) True G290004
XR_003404593.2 lncRNA upstream 24897 4785233 ~ 4798444 (+) True LOC113545162
TU343583 lncRNA downstream 65307 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 68152 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 68152 4898967 ~ 4907812 (+) False G290030
XR_004580165.1 lncRNA downstream 316370 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 422702 5253517 ~ 5253723 (+) True G290192
XM_026944657.2 mRNA upstream 1330 4816687 ~ 4822011 (+) True plpp6
XM_034313899.1 mRNA upstream 180985 4641793 ~ 4642356 (+) True LOC117599796
XM_026944392.2 mRNA upstream 213740 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 213740 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 241560 4561161 ~ 4581781 (+) True fam20b
XM_034313935.1 mRNA downstream 4271 4835086 ~ 4846034 (+) True LOC117599802
XM_034313938.1 mRNA downstream 4271 4835086 ~ 4844480 (+) False LOC117599802
XM_034313936.1 mRNA downstream 5094 4835909 ~ 4846034 (+) False LOC117599802
XM_034313918.1 mRNA downstream 16766 4847581 ~ 4853892 (+) False LOC113545311
XM_026944603.2 mRNA downstream 17469 4848284 ~ 4854725 (+) True LOC113545311
trnad-guc_22 other upstream 473462 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 485367 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 489712 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 494438 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 495799 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 111136 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 111136 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 111136 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 111137 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 904658 5735473 ~ 5801693 (+) True usp24

Expression Profile