RNA id: XM_026944565.2


Basic Information

Item Value
RNA id XM_026944565.2
length 1158
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC113545289
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4447647 ~ 4450922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacagaaaacattattattattattattatttaattctgcTCCAAAGGCTTTGCCTCGACAAGTAAACAAGGTCATAACACGGGAAACAAATCGCAATTGGGCGAAGGAGGGACATACGGAAGCCGcAGCACAGATCAAGGTCACGCATTTAGATGCGCTCACGCGTGGGCTCTCCGAGTCGTGTAAAGGATCACAGGTCTGTGCAGAATGGCAGGACTGATTAACTTTGAGGACGAGAAAGAAGTGAAAGAGTTCTTAGACAATTTGGGAGTGGAGTACAGCTATCAGTGCTACCAGGAGAAAGACCCTGAAGGTTGTCAGAGGTTGGCAGATTACTTGGAGGGGGTGAAGAAGAACTACACTGAGGCCGCTCAGGTTCTCAAGCACAGCTGTGAGAGTTATGGCCATGGAGAGAGCTGCTACAAGCTTGGGGCCTACCATGTCACAGGCAAAGGTGGGGTGACAGAGTGTCTAAAAAGTGCCTACTCCTGCTTTGTCAAGGCATGTAATGCCAAAGGAAAGAAGACAGTGGATGCATGCCACAACGTCGGCTTGCTTGCCCATGATGGTCGAGCCTTAGAGGGTGGTCCAGACCCTGTAGAGGCTCGTCGCTACTATAAGAAAGCTTGTAAGGGAGGGTTTGCACCTAGCTGTTTCAATTTAAGTGCCCTATACATCCAGGGCTCAGCAGAAGTGAAAAAAGACATGCCTAAGGCTCTAAAGTATGCCATGCGGGCCTGCGAGTTGGGCCACGTTTGGGGCTGCACCAACGCCAGCCGCATGTACAAACTGGGTGATGGCACGGAGAAGGATGACGAGAAGGCGGAGAAGCTAAAGAACAGAGCAAAAGAACTTCATGGACAAGAGAAAGAGCGGCAGCTGAAATTCGGAGAGTGAGATGGAGAAAAAGTGCTAGATTCAGTGTGATATTTGGGTTCTCACTGTCGTGCTGCTATACATGATGAAAGAATGTGTGAGAAGTGTAGCTGCATAATGTGTGTATTGGGGCCTGTTTAAGAACTGTGCTATTGCATTTGATTAGTTGATGGTTGCAAACTCAGACAAATGATCTTTATCTGTATGTTTCCATTTGTAAATCTGACAGTACTGTACGGTAATCGAGTTAATAAATGTggtttttaatgcattaatgacA

Function

GO: NA

KEGG:

id description
K18180 COA7, SELRC1, RESA1; cytochrome c oxidase assembly factor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343335 lncRNA upstream 12857 4433235 ~ 4434790 (+) True G289831
TU342943 lncRNA upstream 84559 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA upstream 94846 4350748 ~ 4352801 (+) True LOC117599675
TU343090 lncRNA upstream 109348 4328848 ~ 4338299 (+) True trnad-guc_17
TU343078 lncRNA upstream 112688 4265383 ~ 4334959 (+) True G289615
TU343392 lncRNA downstream 79006 4529928 ~ 4539840 (+) True G289866
TU343408 lncRNA downstream 156446 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 173220 4624142 ~ 4627837 (+) True LOC117599674
XR_004580147.1 lncRNA downstream 253740 4704662 ~ 4798444 (+) False LOC113545162
TU343531 lncRNA downstream 280163 4731085 ~ 4731312 (+) True G289989
XM_026944692.2 mRNA upstream 15292 4425634 ~ 4432355 (+) True echdc2
XM_034313494.1 mRNA upstream 27814 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA upstream 27814 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA upstream 27814 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA upstream 27814 4408765 ~ 4419833 (+) True LOC113545214
XM_026944414.2 mRNA downstream 2394 4453316 ~ 4557487 (+) True ralgps2
XM_026944629.2 mRNA downstream 110239 4561161 ~ 4581781 (+) True fam20b
XM_026944392.2 mRNA downstream 150133 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA downstream 150133 4601055 ~ 4609601 (+) False LOC113545190
XM_034313899.1 mRNA downstream 190871 4641793 ~ 4642356 (+) True LOC117599796
trnad-guc_22 other upstream 97768 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 109673 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 114018 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 118744 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 120105 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 491029 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 491029 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 491029 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 491030 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1284551 5735473 ~ 5801693 (+) True usp24

Expression Profile