RNA id: XM_026944569.2


Basic Information

Item Value
RNA id XM_026944569.2
length 2969
RNA type mRNA
GC content 0.41
exon number 14
gene id blk
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7096141 ~ 7106016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGTTTAAGTcagagtgtatgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagacagagccaGTGAGAAACAGATGCTGCAAGAAAGATATTCTGATGAAGGTCTTTGGGCACTTGAAACTGGATTCTGTCTTTCAACAAGTTGACTCCAAagaaaatttttttttttaaggagttATTCATCCGCATGGAGCATGTTCTCTTGATTAGCCCTCAGTATGAAGGTACAGATGATCACATGGACTAGAGAGCTGCGTGCTGACATTAGTGGAGACTGACACTTCAGTGTTAAAGCGCAACCGTTCACTAGCAGGATGGGTTGCACTTGCAGTGGTGAGAATAAATATGAAGAAAGGCAGCATGTAAATAACAATTCAGCAGCCGCCAGTAAACCACATcGACGAGCACACGCGCAGAATGGGGCAAAGTATGATGAAGACATTGTCATTGCGCAACATGATTTCAACTCAACGAACGAAAGTGACCTTCCATTTAAGAAAGGAGAGAAACTCAAAATCATACATGAGAATGGAGACTGGTGGTTGGCTAAATCTCTGGTTACTGGAGATGAGGGATATATTCCATGCACGTATGTTGCCCGGGCCCACACACTGGAGGTGGAAAGATGGTTTTTCAGAAATTTGACCCGCAGAGACACAGAACGTCTTCTGCTAGCCCCAGGGAACAGGGTCGGCTCATTTCtcgtgagagagagcgagacaacTCCAGGTGCTTTCTCCCTGTCTGTAAGAGACTTGGCACCAGAACATGGTGATGTGGTCAAGCACTATAAGATTCGTACGCTTGATAAAGGTGGATACTACATCTCCCCCTCCCTGACTTTCCCATCTCTGCAGGAACTGATACAGCACTACTCAAGATCATCAGATGGTCTGTGTCAGAGGCTGGGAAGCCCCTGTAAGTCTGCTGCTCCTCAGAGGCCCTGGGGTCAGGATGAGTGGGAGATCCCAAGGGAAACGTTAAAGATGGTAAAGAAGCTGGGTGCTGGGCAATTTGGAGAGGTCTGGATGGGGTACTATAAAAACAACCAGAAGGTGGCCATTAAGACTCTAAAGCCGGGCAGCATGGAGCCAGAGGCCTTCCTGCAGGAGGCTAATCTCATGAAGAAGCTGCAGCATGAGAGACTTGTTAAACTACATGCTGTAGTCACCAAGGAGCCCATCCTCATAGTCACAGAGTACATGGCAAATGGGAGCTTATTAGACTTTCTGAAAACCGATGATGGCAGAAAACTAAAACTGCCCAAGTTGATAGATATGACAGCTCAGATTGCAGAGGGTATGGCCtatatagaaagaaaaaactacATTCACAGAGACCTTCGTGCTGCCAACATATTGGTGTCAGAAACCCTGCACTGTAAAATAGCTGACTTTGGCCTGGCCAGGATTATAGAATCTGAGTACACGGCACAGGAAGGTGCAAAGTTTCCAATTAAGTGGACAGCTCCAGAAGCGATCAATTTTGGTACATTCAGCATCAAGTCAGATGTCTGGTCCTTTGGTATTCTCATGACCGAGATAGTAACCTACGGAAGAGTGCCTTATCCAGGAATGACCAATCCGGAGGTGATCCGTAACCTGGACAGGATGTACAGGATGCCGTGTCCGGATGACTGTCCTGAAGAACTCTATGACATAATGATGGCATGTTGGAGAGAAAAGGCAGAGGACAGACCCACTTTTGAGTACCTGCAAGACACACTCAATGACTTCTACATTGCCACTGAGGGCCAGTATGAGATGCAGCCTTAGCCCCCGCATCCACTCCAAAGAAACAAATGGACAGGATACAAGGACATAAGGGGTAGTAATGGATGAAACGGCTGGTCCAAAAAAAGGTGTGAAGCAATGAACACTTTCTGTAACTGGCCCAATCAATTACTATTATCGTGAATATCTCAATGAAATCATACAgtgacatactgtatttcaACTAATTATATTCCATCCCTGAATTCACATGGAAAATTATGGAGCCCTTTGGAATTTAGTTCACAGACCCTCATGCATTTGATATAATATCTGAACCATGACATACAATTTACAAATATGATGTATGTTATTTCTGTTCAGAAAAGCCTTGAGTAACTAATTTCTTTAACGGCGCTACCTTTGGGACAATATTCACGTACTACAAGCACATTCTGGACACATCACGTTTGCACTTTTTGCAACGTTGGGGTCAAACACCAACTGTGGCACTTTGAAGAAAAGGCTTGGATCATCATTATTACTGACCTGCTAACATGTCCATCAATGCTTTGTCTTCAACTCCTAAAGAACTCCCAGGTGTGGCACTGCAGGGAAACAGAAATGCTTCGGCAAGGATAGCACTGAAGTATGTAGTAGAGATTAGCCTTTGTTACATAAACCCTgagatttattatattttatatacatgtatacCTTTAGCTAATTTCAATATATTTCTGATGTCTTTTCCTAGTGAAATTTTTAAAGTTATCTGTActcaaatgtataaaattaaaaattaaaaagcatgGTACTGTGGCCTGTAGAGTAAAATAGCTTGTGAAAGAACCATGAACTTACAccaaaacagaacaataatcagctaatttttcatttatttgtcatataatATTGCCATCTAATGTATAAAGAACATAAGATAGTTTGGAAAAAACATTGAAAGATCCACTGGCAGTATCATAGACATgtatattagtagtagtatctACTACGTTAAGTGTCTCCTGCTTTGtaaaacaatatattattattattattattattattattattattattattattattattattgttaaattttTAATCTTTGTAAATGCTTGATTGAATAATTGACTACTTTGGAGTTAAAACTACTCTGATAGAGAGACACACGTTGTGCTCAAATTTGTGTTTAAGACACACCTAAAGCActcctcccttctctct

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344873 lncRNA upstream 37558 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 113337 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 156522 6939191 ~ 6939619 (+) True G291058
XR_004580108.1 lncRNA upstream 162281 6930375 ~ 6933860 (+) False LOC117599731
TU345070 lncRNA downstream 114290 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 155034 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 298412 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 383292 7489308 ~ 7520858 (+) True G291423
TU345246 lncRNA downstream 415908 7521924 ~ 7522123 (+) True G291434
XM_026944323.2 mRNA upstream 38514 7053958 ~ 7057627 (+) True sox7
XM_026944650.2 mRNA upstream 46808 7024007 ~ 7049333 (+) True pinx1
XM_026944691.2 mRNA upstream 76455 7012742 ~ 7019686 (+) True tdh
XM_026944555.2 mRNA upstream 92511 6989002 ~ 7003630 (+) False mtmr9
XM_026944600.2 mRNA downstream 12675 7118691 ~ 7147134 (+) True fndc4a
XM_034313491.1 mRNA downstream 12675 7118691 ~ 7147134 (+) False fndc4a
XM_034313492.1 mRNA downstream 13300 7119316 ~ 7147134 (+) False fndc4a
XM_026944342.2 mRNA downstream 102671 7208687 ~ 7219656 (+) True znf513a
XM_026944335.2 mRNA downstream 140156 7246172 ~ 7249822 (+) True atraid
XR_004580167.1 other upstream 76455 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1294448 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2116741 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2117286 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 483352 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 777202 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 778629 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 781512 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 781993 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile