Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026944579.2 |
| length | 1413 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 2 |
| gene id | six1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 7636185 ~ 7639104 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0043282 | pharyngeal muscle development | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002074 | extraocular skeletal muscle development | biological_process |
| GO:0048839 | inner ear development | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0048935 | peripheral nervous system neuron development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K15614 | SIX1; homeobox protein SIX1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404600.2 | lncRNA | upstream | 21205 | 7610487 ~ 7614980 (+) | True | LOC113545343 |
| TU345246 | lncRNA | upstream | 114062 | 7521924 ~ 7522123 (+) | True | G291434 |
| TU345235 | lncRNA | upstream | 115327 | 7489308 ~ 7520858 (+) | True | G291423 |
| TU345188 | lncRNA | upstream | 231080 | 7404428 ~ 7405105 (+) | True | G291380 |
| TU345097 | lncRNA | upstream | 374074 | 7261050 ~ 7262111 (+) | True | G291300 |
| TU345443 | lncRNA | downstream | 26025 | 7665129 ~ 7666009 (+) | True | G291581 |
| TU345444 | lncRNA | downstream | 27815 | 7666919 ~ 7667805 (+) | True | G291582 |
| TU345535 | lncRNA | downstream | 138525 | 7777629 ~ 7782008 (+) | False | atp5mpl |
| TU345543 | lncRNA | downstream | 194226 | 7833330 ~ 7837080 (+) | False | G291644 |
| TU345545 | lncRNA | downstream | 194226 | 7833330 ~ 7837080 (+) | True | G291644 |
| XM_026944346.2 | mRNA | upstream | 6263 | 7623221 ~ 7629922 (+) | False | six4b |
| XM_026944345.2 | mRNA | upstream | 6263 | 7623222 ~ 7629922 (+) | True | six4b |
| XM_026944338.2 | mRNA | upstream | 133747 | 7478282 ~ 7502438 (+) | True | rhoj |
| XM_026944424.2 | mRNA | upstream | 279271 | 7348155 ~ 7356914 (+) | True | chrna2b |
| XM_026944605.2 | mRNA | upstream | 291270 | 7339079 ~ 7344915 (+) | True | si:ch211-142k18.1 |
| XM_026944474.2 | mRNA | downstream | 85202 | 7724306 ~ 7767694 (+) | True | rtn1b |
| XM_026944475.2 | mRNA | downstream | 117792 | 7756896 ~ 7766704 (+) | False | rtn1b |
| XM_026944647.2 | mRNA | downstream | 135388 | 7774492 ~ 7776361 (+) | True | rd3l |
| XM_026944390.2 | mRNA | downstream | 138493 | 7777597 ~ 7781997 (+) | True | atp5mpl |
| XM_026944452.2 | mRNA | downstream | 146318 | 7785422 ~ 7832026 (+) | True | ppp1r13bb |
| trnac-gca_25 | other | upstream | 46746 | 7589368 ~ 7589439 (+) | True | trnac-gca_25 |
| XR_004580167.1 | other | upstream | 616499 | 7012742 ~ 7019686 (+) | False | tdh |
| XR_004580141.1 | other | upstream | 1834492 | 5735473 ~ 5801693 (+) | True | usp24 |
| XR_004580099.1 | other | upstream | 2656785 | 4941952 ~ 4979400 (+) | False | dnm3a |
| XR_004580100.1 | other | upstream | 2662124 | 4941951 ~ 4974061 (+) | False | dnm3a |
| trnaa-cgc_5 | other | downstream | 244114 | 7883218 ~ 7883289 (+) | True | trnaa-cgc_5 |
| trnaa-cgc_6 | other | downstream | 245541 | 7884645 ~ 7884716 (+) | True | trnaa-cgc_6 |
| trnaa-ugc_17 | other | downstream | 248424 | 7887528 ~ 7887599 (+) | True | trnaa-ugc_17 |
| trnaa-ugc_18 | other | downstream | 248905 | 7888009 ~ 7888080 (+) | True | trnaa-ugc_18 |
| trnaa-cgc_7 | other | downstream | 249661 | 7888765 ~ 7888836 (+) | True | trnaa-cgc_7 |
