Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026944591.2 |
| length | 3499 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 16 |
| gene id | cdh2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 6461728 ~ 6504131 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060088 | auditory receptor cell stereocilium organization | biological_process |
| GO:0048752 | semicircular canal morphogenesis | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0070285 | pigment cell development | biological_process |
| GO:0001502 | cartilage condensation | biological_process |
| GO:0042478 | regulation of eye photoreceptor cell development | biological_process |
| GO:0045198 | establishment of epithelial cell apical/basal polarity | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0042246 | tissue regeneration | biological_process |
| GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
| GO:0048331 | axial mesoderm structural organization | biological_process |
| GO:0035142 | dorsal fin morphogenesis | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0007398 | ectoderm development | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0007413 | axonal fasciculation | biological_process |
| GO:0007416 | synapse assembly | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016342 | catenin complex | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K06736 | CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU344600 | lncRNA | upstream | 38762 | 6422672 ~ 6422966 (+) | True | G290879 |
| TU344584 | lncRNA | upstream | 119188 | 6342263 ~ 6342540 (+) | True | G290863 |
| TU344375 | lncRNA | upstream | 223812 | 6237714 ~ 6237916 (+) | True | G290699 |
| TU344338 | lncRNA | upstream | 301688 | 6135952 ~ 6160040 (+) | False | b4galt6 |
| XR_004580161.1 | lncRNA | upstream | 642662 | 5815902 ~ 5819066 (+) | False | LOC117599801 |
| TU344666 | lncRNA | downstream | 209796 | 6713927 ~ 6727514 (+) | True | G290935 |
| TU344782 | lncRNA | downstream | 330276 | 6834407 ~ 6834698 (+) | True | G291037 |
| XR_004580109.1 | lncRNA | downstream | 426238 | 6930369 ~ 6933860 (+) | False | LOC117599731 |
| XR_004580108.1 | lncRNA | downstream | 426244 | 6930375 ~ 6933860 (+) | False | LOC117599731 |
| XR_004580107.1 | lncRNA | downstream | 426247 | 6930378 ~ 6933860 (+) | True | LOC117599731 |
| XM_026944489.2 | mRNA | upstream | 231176 | 6214741 ~ 6230552 (+) | True | dsc2l |
| XM_026944686.2 | mRNA | upstream | 304964 | 6135920 ~ 6156764 (+) | True | b4galt6 |
| XM_026944682.2 | mRNA | upstream | 333826 | 6090426 ~ 6127902 (+) | True | trappc8 |
| XM_026944583.2 | mRNA | downstream | 118796 | 6622927 ~ 6629974 (+) | True | aqp4 |
| XM_026944352.2 | mRNA | downstream | 136836 | 6640967 ~ 6660584 (+) | False | kctd1 |
| XM_026944351.2 | mRNA | downstream | 145252 | 6649383 ~ 6660584 (+) | True | kctd1 |
| XM_026944412.2 | mRNA | downstream | 157749 | 6661880 ~ 6676354 (+) | True | taf4b |
| XM_034313819.1 | mRNA | downstream | 187503 | 6691634 ~ 6699817 (+) | False | LOC113545329 |
| XR_004580141.1 | other | upstream | 660035 | 5735473 ~ 5801693 (+) | True | usp24 |
| XR_004580098.1 | other | upstream | 1482328 | 4941951 ~ 4979400 (+) | False | dnm3a |
| XR_004580167.1 | other | downstream | 508611 | 7012742 ~ 7019686 (+) | False | tdh |
| trnac-gca_25 | other | downstream | 1085237 | 7589368 ~ 7589439 (+) | True | trnac-gca_25 |
| trnaa-cgc_5 | other | downstream | 1379087 | 7883218 ~ 7883289 (+) | True | trnaa-cgc_5 |
| trnaa-cgc_6 | other | downstream | 1380514 | 7884645 ~ 7884716 (+) | True | trnaa-cgc_6 |
| trnaa-ugc_17 | other | downstream | 1383397 | 7887528 ~ 7887599 (+) | True | trnaa-ugc_17 |
