RNA id: XM_026944595.2


Basic Information

Item Value
RNA id XM_026944595.2
length 2217
RNA type mRNA
GC content 0.40
exon number 3
gene id fam167ab
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6905521 ~ 6911188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttctcatTCAAATCCAAGCGGAAAGTGGCGGAGCGGCGCGAGCGCGCGCGcaactcttttctttcttcgCGCGCGTCTTCCTCTCCTCCGTCTGCAGCGCCGTATAGCCgGATTTCCTAAACCCTGTTTCTTGCCTGAGGCCAGGaagaaaaataactaaattatgCTTTAAGGAAGAAGCATACATGATTTTACAAGCTTACATGATTTTTCATGCTCAAGGACAAGATGTGGATGTTCTCTATTTGGATGTTAAACATAAGAGGATGAATTACATCCCATATTCTGTCATTCCCTTTTGCCTGCAAACTCATTTGCACTTCCAAAGGTCCAGATCAGCTTTAGTGATCAGCTAAAGCAAAAACTAGGATGCATTAGCATTTCAGTTTATCTCCAGTTTATTTTTAACTActcttgtgtttgtgtaatagACAAGCCATGGACACATTGCCACAGATTAATGTAAACGACGTCAGTAGCCTGGACTGTGATAACGTGGAGGTTGCAGCAGATGACCATTTAAGAAATTTGAAGGCTTTGGCTGAGAGACTAAGACTACAGACCAGGAGACCCTCCTATCAAGAGTGGAAGGCCCAGGTAGAAGCTACCAGTGCCAAAGGACCATCAGACCCAACAAAGTCCACTGTGTTAGGTCAAGATACAGAACAGGAACACACAGACAGGCCCGAAAGAAGTGACCACAAGTTGGACTTAACACAAGAATGCAGCCTGACTTCAAGAAACCTGAAAGGGTTTGGGAATATTGATGAGGCTCTGATCTGGCTGAGGAAAGAACTGAAGGAGATGCGTTTGCAGGACCAGCAGCTTGCCCGCCAGCTCATGCGCCTGCGAGGAGATATCAACAAACTGAAGATCGAGCAGACGTGCCACCTGCACCGACGGATGCTCAATGATGCCACGTTTGGCCTGGAGGAGCACGACGAGCTCTCTGATCTTCTGTGTGATAGTCCTGTTACACCTGGGTTTGGTCTGTCAGCACCTCTCCGCCTGATTGGTGTCACTAAGATGAACATAAACACAAGACGCTTCTCCCTCTGCTAACCCAACAGTAACAGAGTTTATAAGTCACGCGCATCATGTCTTCAGTGTAAAAACAAGGATCttatatgaaaatgtatataGTGAAAAATATTTTGCGACATATTTTGTAACGAAACATGAAACTGGTAGCAGTAATGATGCGCTCACCAAGTAATTTGCTTTTACTGCTTTCATTGCTTTCTGCACTGTATACAGTAtgctgtattatttttaattacacatcAAGCCTTAtaagctcatttaaaaaaaatacttggaCAGTTAAGGCACACAGAATGTGGAGAAAGTATGCTTTAAaaattcttcttcattttgtatTGGTTTGTACATACGTGAACAAAATTTTCTACAGACATAATTATAGCAGAGACAGGAAAAGTAATCTCAAATACAAGAACGAATGCAATGTGCCAGCTTGACTTCATGTGCATGAAGcttatatttcagttttcatttcaatAAAATGTACTCAGATTTGTACATATGGCAAAGTATCTCAAATCAGGACCTCAGTAATTTATCAGTGGGACAGTTTGAATttcataatataaattattttgtttttaacattaaGATCAAGAAGAACATTTTCTATCTGCTCTGTATCTGATAAAGCGTTGACACTGAAAGCTTGGGTATAAAACACAGTGTATTGCTTTGATGACAGTTTTCAAAGTTTTGCATCTACTACtattactttcttttttgtgtCCTAGTTTTAGTGTGCAGGACAAGAGATTCTGGATTAATTTGAACATTCTCGAAGTTAAGTAAACCATTTACTCTACAGACGTCCCTCACATTTACTATGGTCTGTACAGAGAACTCACAGATCTCTTGGCACATATCcaaatgaggaataaaacatgatggggaatgttgttataggaaaataatcatagaTAGGatctaacagcatgtccagaggtcttttattcctcttataacccAGCAATTTGCTAACGAATACAactgttaatgtattaatgaaagACATGCTGagttttttaactttataagTTGTgcttaatgctgtggaatgtccttGAGACAGCTTCCtgttaacagctataaacagttgatCCCCCACTAGCCTCTTATTTTCCTTTATCTTGAACTTAATAATGCagcttatgttactgagaaaccataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344782 lncRNA upstream 70828 6834407 ~ 6834698 (+) True G291037
TU344666 lncRNA upstream 178012 6713927 ~ 6727514 (+) True G290935
TU344600 lncRNA upstream 482560 6422672 ~ 6422966 (+) True G290879
TU344584 lncRNA upstream 562986 6342263 ~ 6342540 (+) True G290863
TU344375 lncRNA upstream 667610 6237714 ~ 6237916 (+) True G290699
XR_004580109.1 lncRNA downstream 19181 6930369 ~ 6933860 (+) False LOC117599731
XR_004580108.1 lncRNA downstream 19187 6930375 ~ 6933860 (+) False LOC117599731
XR_004580107.1 lncRNA downstream 19190 6930378 ~ 6933860 (+) True LOC117599731
TU344819 lncRNA downstream 28003 6939191 ~ 6939619 (+) True G291058
TU344857 lncRNA downstream 70775 6981963 ~ 6982804 (+) True G291096
XM_026944472.2 mRNA upstream 12173 6884303 ~ 6893353 (+) True eif5
XM_026944427.2 mRNA upstream 37495 6850356 ~ 6868031 (+) True LOC113545215
XM_026944567.2 mRNA upstream 56993 6833386 ~ 6848533 (+) True tnfaip2a
XM_026944379.2 mRNA upstream 98185 6797339 ~ 6807341 (+) True si:dkeyp-72h1.1
XM_026944644.2 mRNA upstream 205709 6691636 ~ 6699817 (+) True LOC113545329
XM_026944554.2 mRNA downstream 75921 6987109 ~ 7003630 (+) True mtmr9
XM_034313789.1 mRNA downstream 75935 6987123 ~ 7003630 (+) False mtmr9
XM_026944555.2 mRNA downstream 77814 6989002 ~ 7003630 (+) False mtmr9
XM_034313790.1 mRNA downstream 77846 6989034 ~ 7003630 (+) False mtmr9
XM_026944691.2 mRNA downstream 101554 7012742 ~ 7019686 (+) True tdh
XR_004580141.1 other upstream 1103833 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1926126 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 101554 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 678180 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 972030 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 973457 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 976340 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile