RNA id: XM_034313491.1


Basic Information

Item Value
RNA id XM_034313491.1
length 2355
RNA type mRNA
GC content 0.43
exon number 7
gene id fndc4a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7118691 ~ 7147134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGTGGTGAGTTAAAGCCTGGCTGCACTATGACGTATGGCGCAAACGTCATAGcgcaacatcttaaccactaaAGCAGGATGCATTCAGAAATAAAGAAGGTCGGgctgttttttggggtttttttgcaCATTGAGCCAAAGCGCGTGAGCGGGTGAAGAGTTAACGTTAGCGCTGCGCGTTGCCTTTACAGATGCACTGCTCACTACACAACTAACACTCTTCAACACCGAGGATGAAGATGAGCCAAACTCTGCGATCTTCATCCTACTTGCTGTAGGATGTATGGGAGAAATCCTGGACCGACTGATATCCTTTCCACGTGAACCTGGAAGAAGCAACAATATACCCCAGCAGTCAAAGCTGTAGAAAATGAGTCAAGACACCTGACATAACGCGACATGGACGTCATCTGGAGCTcgtcaagtgtgtGATTCGGTGAACATGGAGCGGATGAAGAAGCGCGCCTGAAGCTGTTTGGAGACTGCGATATCCACAAGAAGAAGCCCGAGCAGCGTGGAGAAATATGGCTCGCCTCTTCCTTCTGCTTAACTCTGTCGCACTGTTGCTTTTTGgcactgacatgtttttggtcGGAGCAAACCGCCCACCTGCTCCAGTCAACGTGTCAGTCATGAATCTGAGAGCtgattcagccacagtgacctGGGAAGTTCCAGAGGGGGACATCATTATTGGCTTCTCAGTCCTACAGCAGAAGCAAGATGGCCACATGCAGCGGTTTATCCGGGAGGTAAACACCACCAGCAGGGCCTGTGTGCTTTGGGACCTGGAGGAGGAAACAGACTACATAGTCCAGGTCCAGTCTATCGGCCTGTATGGAGAAAGTCAGGCCAGCAAGCGTGTCCACTTCAAAACCCTCAAGAAGTCAGACCGCTTCCCTTCCAACAGCTCGAACCAAGaTGACCCAACTGTTGAAGGTCTGGACAAGTCTAGAAACCTGCAAACAGGAGAGATGATCATCATTGTGGTGGTGCTGCTTATGTGGGCAGCGGTCATCGCACTCTTCTGCCGGCAGTATGACATCATCAAGGACAGCgataacagtaacagtaaagaGAAGGTGAAGCCGTTGTCTGAGAGGAGCACACCAGAGCACCACAGTGGAGGACTGCTCAGGAGCAAGTTTCATCAGTCTGTGCCATCTATCAACATCATAGAGGTCTAATCGGACGAGTGAAGATGTTTGCTCTTCCCACTGTCAACATGATGCTACATTGCTGTAAACCTTCTCCACCACAGAGTCAGGATGCCATGTACAAGGAACCGTTATTCACACTGGCTGCCACTGAAGCTAGAACTTTCCATCCCACAACTATGAGCATGCACGCTCAATGTGTCAAAAGCAGTCTATTCCTGTAGGGTAATTGTACATAAAGTGAAGTAGAGCTGTATTAAGGGAGCTCATTCCCACTGGGTTTTATGTTCATTCAGTGTGATTACAGTGCACACTTTTCATTCTGGGATCACGTGATTACATTGTGTTTCTAATATGGTACTGTGTGGTCCTGTGAAAGGCTACTGTAGAAGAACAGGGTTTTTAATGGTTccacgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgaaCACCCGGTCACAGCCCCTGAAACTGCTGAATGAAGCCAAGTGTGCACTCTGGCACATAATTAACGTAAGCTCTTGTGCCATCATGGCCAAAAATGTTCCTAAAACAAGTTTTCTTAGAAAATACTTATACAATAGAAAGATTAGAAGGCCGTGTCACTGTTGGATATATGATGAATGCACTTTTGATTTGAGTACACCAGAACtgattaaaacttttaaaaaaaaatgctttgtttGCACTATAAGTATATATGGATAGTTTGggtaacattttacattaaggCATCCTTAACTATCATCATTTTAGCTTTAGTTAACACACCATAAACTTTGCATTATTATACCATAAgtaatgttaaatatgtaattaatgcctttttaaaaataacgaaccaaataaaccaaataattaatattttcattatgaaatgtttatttcatctgTACATATAAATATGTGTCAATACAGATCAATATGAATAAAGCCTGTATTAATATTTGCAgtggttaatattaatatttgcagTGTGATAAAATTCATAAGTATTGCTGAATGGTGAAGTCCAGTATTTACATCTGGAGACCTGAGTTcagttgattattattttagtaaaatgctgtaatttCATTTATGGTCATTTTTTGTGGACTTACTATATTATTTTTAGTCTTGAATGAAATAATGCAGGTGTATttagttaaaattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344873 lncRNA upstream 60108 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 135887 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 179072 6939191 ~ 6939619 (+) True G291058
XR_004580108.1 lncRNA upstream 184831 6930375 ~ 6933860 (+) False LOC117599731
TU345070 lncRNA downstream 73172 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 113916 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 257294 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 342174 7489308 ~ 7520858 (+) True G291423
TU345246 lncRNA downstream 374790 7521924 ~ 7522123 (+) True G291434
XM_026944570.2 mRNA upstream 12675 7096141 ~ 7106016 (+) True blk
XM_026944569.2 mRNA upstream 12675 7096141 ~ 7106016 (+) False blk
XM_026944323.2 mRNA upstream 61064 7053958 ~ 7057627 (+) True sox7
XM_026944650.2 mRNA upstream 69358 7024007 ~ 7049333 (+) True pinx1
XM_026944691.2 mRNA upstream 99005 7012742 ~ 7019686 (+) True tdh
XM_026944342.2 mRNA downstream 61553 7208687 ~ 7219656 (+) True znf513a
XM_026944335.2 mRNA downstream 99038 7246172 ~ 7249822 (+) True atraid
XM_034313432.1 mRNA downstream 116792 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA downstream 120272 7267406 ~ 7276146 (+) True nme6
XM_026944356.2 mRNA downstream 120272 7267406 ~ 7276146 (+) False nme6
XR_004580167.1 other upstream 99005 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1316998 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2139291 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2139836 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 442234 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 736084 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 737511 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 740394 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 740875 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile