RNA id: XM_026944603.2


Basic Information

Item Value
RNA id XM_026944603.2
length 2519
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113545311
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4847581 ~ 4854725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCTCGGCGTGTTGCTGTGATCGGAGGAGGAAGCTCTGGACTGACCTGCATTAAGTGCTGCTTGGATGAAGGTCTGGAGCCAGTGTGCTTCGAAAGCAGTGATGACATTGGAGGACTCTGGAGGTTTAAGGAGAATCCTGAGACAGACAGGGCCAGCATCTATCATTCAGTGATCATCAACACCTCAAAGGAGATGATGTGTTTCAGCGATTTCCCCATTCCAGCTCATTTCCCAAACTACATGCACCATACTTATATTATGGACTACTTTCGCATGTATGCTGACCACTTCCAGCTCAAGCGCTATATCCGCTTGCAGaCAAAAGTACTTAACGTCAGCCCAAGACCAGATTTTGCTCAGTCAGGTCAGTGGGACATTGAGACAGAGGACAGGgatgggaagagagagaaacatgtgTTTGATGCTGTGCTTGTCTGCACTGGACACCATTGCCACCCTCAACTTCCTGTGAAAGACTTCCCAGGGATAGAGACATTCAAGGGGAAATACTTCCACAGCCGTGACTACAAGACTCAAGATGAATGGCGGAACAAGAGAGTGGTCGTGATTGGAATTGGTAATTCAGGAGGTGACATTGCTGTGGAGCTCAGCAGGGTGACCAAACAGGTTTTCCTGAGCACTAGGAGAGGCTCTTGGATCCTGAATCGTGTAGGAACCAATGGTATTCCAGGTGATATGATTTTTAACAGGGTATTTCGAATGGCCCAGTGTATTCTGCCCTTTGGATTCTTATGCAACGTGGCAGAGAAGAGGCTCAATGAAAGGTTTAACCATGCAATGTATGGGCTGAAGCCAAAGCACAGATTGCTCAGCCAGCACCCCATGGTAAATGATGAGCTGCCAAATCGGCTCATTTCTGGCACCATCAGGGTGAAGCCAAATGTGCGTGAATTCCGTGGCTCCAGTGTCATCTTTGAGGATGGCACTGTTGAGGACGACATTGACCTGGTGGTGTTTGCCACAGGCTACACCTTCTCTTTCCCCTTCCTGCAAAGCGATGTGATCTCAGTCACAGAGAACAAGACATGCCTGTATAAGTATATGTTCCCTCCAGGCCTTGAGAGACCCACACTGGCTATCATTGGCCTCATCCAACCTTTGGGAGCCATCATGCCCATCTCTGAGATGCAGGCTCGCTGGGCCACGCGTGTCTTCAAAGGGCTTAGTAAGCTTCCGTCAATGAGCAGCATGCTGAAAGACATTAAAGCGAAGGAGGACCGTATGGCTAAGAGGTACGTAACCTCCCAGAGACATACCATTCAAGTAGATTACCTCCCCTACATGGATGAGCTGGCCATGCAAGTGGGTGTCCGTCCCAACCTCCTATGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCAGCACCCCGTACCAGTTTCGTCTGTGTGGGCCGGGCCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAATGGGAGCGTGTAGCCCAGCCATTCAAGACACGCAGTGTCCCTGTGCAGAAGTCAAGTCAATCCCATCTCCCTCTCCTACTGTCTGTGTCTGCTGCTGCTCTACTGTCGACTGCCTACTTCACCAGGGCCAACCTTACTAGTTTCCTCCCAGACATCACATCCTTTCTGGAGAGGCTAAAATCTCATCTGCCTCTGCCTGTGGTGAGGCAGTGACCACTAATGCAGTGATTTATTTCATAACAGCACAGACAGGAGTTTATTCTCCTGCAAGCGTCATACATGGAGAAGGGCTAAGAGATACTTTATGAGTAAGAAAATGACATGAAAGTGaagttatttttaacatttcctgTTAAACCTTTAAAGCCTCAACAATAGCATCATGAAATACTTGCTATCTAATGATTCTCATTCTAAACATCTAAATACACATATTCTACTCCACTGGAGACCAGTGCTATTGTTTGCAAACAGACTTAAAAACACACTATAGTGGTACTTTATATGCCTTACATTCAAAGCTGCAGGTGCTAATTTTGGAAATGTAACCAAACCTTTATATAATTTTAGATAATTTGGTAATATGTACCAAAATGGTCTGTCTTGTGGCttttattgaaataaacatgCAACTTGTTTTCTACTTTGAATACCAGATAAGTTGACTTTCTCACATGGTTATGCATATCATTAacacttaaaataataaaataataataataaaatgataatataaaataatcattttcgttttaatgatgaaatataagtttatttaattttttttcattttgcatcaCTTCCTGCACATTGCAACAAGTACATTATGATGCTTTATATTTTCactaaatgctttatttttattgcctTTATTGTAGTTTTCCTTTGATATGTTGAACATCTTAATTGTCTAAATTCTGAATGAATTACAGTACATGAGTACATGCAGATATTTCTGTGAAACTTGACTATGAATCCTGTAAAACTTCATTAAATGTTCATTAATTCTAATgccattttttcattaaataatttttgatGATGCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343551 lncRNA upstream 33488 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 33488 4812169 ~ 4814796 (+) True G290009
TU343547 lncRNA upstream 41704 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 45256 4802813 ~ 4803028 (+) True G290004
XR_003404593.2 lncRNA upstream 49840 4785233 ~ 4798444 (+) True LOC113545162
TU343583 lncRNA downstream 41397 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 44242 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 44242 4898967 ~ 4907812 (+) False G290030
XR_004580165.1 lncRNA downstream 292460 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 398792 5253517 ~ 5253723 (+) True G290192
XM_034313935.1 mRNA upstream 2250 4835086 ~ 4846034 (+) True LOC117599802
XM_034313936.1 mRNA upstream 2250 4835909 ~ 4846034 (+) False LOC117599802
XM_034313938.1 mRNA upstream 3804 4835086 ~ 4844480 (+) False LOC117599802
XM_034313461.1 mRNA upstream 17469 4823341 ~ 4830815 (+) False LOC113545285
XM_034313886.1 mRNA downstream 4598 4859323 ~ 4886501 (+) True prrc2c
XM_034313887.1 mRNA downstream 4598 4859323 ~ 4886501 (+) False prrc2c
XM_026944353.2 mRNA downstream 77764 4932489 ~ 4939511 (+) True mettl13
XM_034313596.1 mRNA downstream 87226 4941951 ~ 4979400 (+) False dnm3a
XM_034313593.1 mRNA downstream 87226 4941951 ~ 4979400 (+) False dnm3a
trnad-guc_22 other upstream 498405 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 510310 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 514655 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 519381 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 520742 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 87226 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 87226 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 87226 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 87227 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 880748 5735473 ~ 5801693 (+) True usp24

Expression Profile