RNA id: XM_034313918.1


Basic Information

Item Value
RNA id XM_034313918.1
length 1775
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC113545311
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4847581 ~ 4854725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGCAGTCTAGGAAGTCTGAGAAAAACAGCAGAAGTTCCTGTATAATTTTTGGAGCTTAGTTTGTATCGTAATCTCGTCAGCAAGAAGATGGCTCGGCGTGTTGCTGTGATCGGAGGAGGAAGCTCTGGACTGACCTGCATTAAGTGCTGCTTGGATGAAGGTCTGGAGCCAGTGTGCTTCGAAAGCAGTGATGACATTGGAGGACTCTGGAGGTTTAAGGAGAATCCTGAGACAGACAGGGCCAGCATCTATCATTCAGTGATCATCAACACCTCAAAGGAGATGATGTGTTTCAGCGATTTCCCCATTCCAGCTCATTTCCCAAACTACATGCACCATACTTATATTATGGACTACTTTCGCATGTATGCTGACCACTTCCAGCTCAAGCGCTATATCCGCTTGCAGaCAAAAGTACTTAACGTCAGCCCAAGACCAGATTTTGCTCAGTCAGGTCAGTGGGACATTGAGACAGAGGACAGGgatgggaagagagagaaacatgtgTTTGATGCTGTGCTTGTCTGCACTGGACACCATTGCCACCCTCAACTTCCTGTGAAAGACTTCCCAGGGATAGAGACATTCAAGGGGAAATACTTCCACAGCCGTGACTACAAGACTCAAGATGAATGGCGGAACAAGAGAGTGGTCGTGATTGGAATTGGTAATTCAGGAGGTGACATTGCTGTGGAGCTCAGCAGGGTGACCAAACAGGTTTTCCTGAGCACTAGGAGAGGCTCTTGGATCCTGAATCGTGTAGGAACCAATGGTATTCCAGGTGATATGATTTTTAACAGGGTATTTCGAATGGCCCAGTGTATTCTGCCCTTTGGATTCTTATGCAACGTGGCAGAGAAGAGGCTCAATGAAAGGTTTAACCATGCAATGTATGGGCTGAAGCCAAAGCACAGATTGCTCAGCCAGCACCCCATGGTAAATGATGAGCTGCCAAATCGGCTCATTTCTGGCACCATCAGGGTGAAGCCAAATGTGCGTGAATTCCGTGGCTCCAGTGTCATCTTTGAGGATGGCACTGTTGAGGACGACATTGACCTGGTGGTGTTTGCCACAGGCTACACCTTCTCTTTCCCCTTCCTGCAAAGCGATGTGATCTCAGTCACAGAGAACAAGACATGCCTGTATAAGTATATGTTCCCTCCAGGCCTTGAGAGACCCACACTGGCTATCATTGGCCTCATCCAACCTTTGGGAGCCATCATGCCCATCTCTGAGATGCAGGCTCGCTGGGCCACGCGTGTCTTCAAAGGGCTTAGTAAGCTTCCGTCAATGAGCAGCATGCTGAAAGACATTAAAGCGAAGGAGGACCGTATGGCTAAGAGGTACGTAACCTCCCAGAGACATACCATTCAAGTAGATTACCTCCCCTACATGGATGAGCTGGCCATGCAAGTGGGTGTCCGTCCCAACCTCCTATGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCAGCACCCCGTACCAGTTTCGTCTGTGTGGGCCGGGCCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAATGGGAGCGTGTAGCCCAGCCATTCAAGACACGCAGTGTCCCTGTGCAGAAGTCAAGTCAATCCCATCTCCCTCTCCTACTGTCTGTGTCTGCTGCTGCTCTACTGTCGACTGCCTACTTCACCAGGGCCAACCTTACTAGTTTCCTCCCAGACATCACATCCTTTCTGGAGAGGCTAAAATCTCATCTGCCTCTGCCTGTGGTGAGGCAGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343551 lncRNA upstream 32785 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 32785 4812169 ~ 4814796 (+) True G290009
TU343547 lncRNA upstream 41001 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 44553 4802813 ~ 4803028 (+) True G290004
XR_003404593.2 lncRNA upstream 49137 4785233 ~ 4798444 (+) True LOC113545162
TU343583 lncRNA downstream 42230 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 45075 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 45075 4898967 ~ 4907812 (+) False G290030
XR_004580165.1 lncRNA downstream 293293 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 399625 5253517 ~ 5253723 (+) True G290192
XM_034313935.1 mRNA upstream 1547 4835086 ~ 4846034 (+) True LOC117599802
XM_034313936.1 mRNA upstream 1547 4835909 ~ 4846034 (+) False LOC117599802
XM_034313938.1 mRNA upstream 3101 4835086 ~ 4844480 (+) False LOC117599802
XM_026944557.2 mRNA upstream 15637 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA upstream 15637 4823341 ~ 4831944 (+) True LOC113545285
XM_034313886.1 mRNA downstream 5431 4859323 ~ 4886501 (+) True prrc2c
XM_034313887.1 mRNA downstream 5431 4859323 ~ 4886501 (+) False prrc2c
XM_026944353.2 mRNA downstream 78597 4932489 ~ 4939511 (+) True mettl13
XM_034313596.1 mRNA downstream 88059 4941951 ~ 4979400 (+) False dnm3a
XM_034313593.1 mRNA downstream 88059 4941951 ~ 4979400 (+) False dnm3a
trnad-guc_22 other upstream 497702 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 509607 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 513952 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 518678 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 520039 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 88059 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 88059 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 88059 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 88060 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 881581 5735473 ~ 5801693 (+) True usp24

Expression Profile