RNA id: XM_026944605.2


Basic Information

Item Value
RNA id XM_026944605.2
length 1558
RNA type mRNA
GC content 0.41
exon number 3
gene id si:ch211-142k18.1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7339079 ~ 7344915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaTACTGTCTTCCTCTCTCGACTGCAAAAGTAGTTACCAAACAGTAGTTACCAGGCAGGGTTAAAGAATTTTGAGCTTCCAAGCTACTCTACAGACTTTTATGTTGGAACAAGAGCAATGAAGTCACTGATGGATTGATTTTTTGTGTGCTACCTTTCAGCCCCTGAAGAATCTGGTCTTATTGGCTGAAATTGGGCCAGAATGGAGCAGCGCTGGACGCTGTGTGCATTGCTATTCATAGCAACACTGATACTAGGCCACTGCCAGAGTGGTGATGGAGGGGACTGGGGATCAGGCAATATGCCAGAGCTTTTGTTCACTACTACCGCAACTCCTATTCCAAACACAGTCTATAATGATCCAGCCAACCCTGGGAGCACAGACTGGACCAAGCCGCTTTTTCAAGTCATTCCAGACAGCAAAGCTGATGGCTGCTCGGTCAATTTCCACACCAGCCAGGCTATGTCCAGGCGATTACAAGTGGCCAAGGAGGAGATGGCTTATTTGAAAGCCCTCCAGCATGGGAATCAGGCAGTGATGGAGAATCTGATCCAGTTTGTTGGAGCAGAAATGGGGGATCAGAGCTATCAAGAGATTATACAAGAAAATATTGCTGCTATCAAGGAGAATCATGCAAGTTGTGTGGGAGTGTTGAAAAAGGCAACTGAGGAGTTGGAGGACCAGTTAGAAGGTGCTGATTTTGCTGGAATTCAGAAAATCAGTGAAGAGTCTTTGACCTTTGAAGGGATGCTGCACGCGCTACAACAAACCTCGCCAACCAACTGGAGACCTCCTCACGGACCCTTCACCTCCGGATAACAGAGCAGCTGAGAAAGAGCTTAAAACTAAAAAGGACATAAACCCCATAAAGGGAAGACTATCATGCTTGTGAAATGTGACACCCTCAAATGGCATGAAGACAAAAGGAATTAAGAggataatttaatatttaagtgaTTTTCAAAGATGtgataattaaataatcagaaaatcACTTCATTATACTCTAGgttaaaagtttaaagttttgCACAAGTTTTAAATTTGTGAATTAAAATGGtctacataaaaaagaaaaaaatcttggaAGAATAGTGACATCTAGTACAATTATTTTTGAATTCCAGGCAGCTAGCTAAGTGTTATTGCTTTCTTGGTGCTAGGGTGCAGCTGGAGAGTGGACAGCATGGGCCCCTCAGTCAGTGCAGATATATGTGTGCtgggaggagaaaaagagaaatgacagtGAGGTCATAGAAAAACAAATGGAGCCTCATCTGGCAGCCAAAGCAGAAGGGTGTTTGTTATCACAATTGTTTAATTCCTCTCAATTAATCATAACGAAACACTGTGTAAAGTATGATTTATGTTGACCAGCTGTAAATGGGCTGTGTGCAGAATGTATATGTGCATAGTTGAAGGATAAAAGTGCTTGGATGCCCTGTAGAGTATGCATACTTTCATGCATACTTATGCATATTTAGATGCTTTGGGACATTATTTAACTAATATAGGCATATTCATCTGTACAgaataaagtgctaatttaaccTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345097 lncRNA upstream 76968 7261050 ~ 7262111 (+) True G291300
TU345070 lncRNA upstream 111852 7220306 ~ 7227227 (+) True G291274
TU344873 lncRNA upstream 280496 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 356275 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 399460 6939191 ~ 6939619 (+) True G291058
TU345188 lncRNA downstream 59513 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 144393 7489308 ~ 7520858 (+) True G291423
TU345246 lncRNA downstream 177009 7521924 ~ 7522123 (+) True G291434
XR_003404600.2 lncRNA downstream 265572 7610487 ~ 7614980 (+) True LOC113545343
TU345443 lncRNA downstream 320214 7665129 ~ 7666009 (+) True G291581
XM_034313432.1 mRNA upstream 62933 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA upstream 62933 7267406 ~ 7276146 (+) True nme6
XM_026944356.2 mRNA upstream 62933 7267406 ~ 7276146 (+) False nme6
XM_026944335.2 mRNA upstream 89257 7246172 ~ 7249822 (+) True atraid
XM_026944342.2 mRNA upstream 119423 7208687 ~ 7219656 (+) True znf513a
XM_026944424.2 mRNA downstream 3240 7348155 ~ 7356914 (+) True chrna2b
XM_026944338.2 mRNA downstream 133367 7478282 ~ 7502438 (+) True rhoj
XM_026944346.2 mRNA downstream 278306 7623221 ~ 7629922 (+) False six4b
XM_026944345.2 mRNA downstream 278307 7623222 ~ 7629922 (+) True six4b
XM_026944579.2 mRNA downstream 291270 7636185 ~ 7639104 (+) True six1b
XR_004580167.1 other upstream 319393 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1537386 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2359679 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2360224 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 244453 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 538303 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 539730 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 542613 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 543094 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile