RNA id: XM_026944620.2


Basic Information

Item Value
RNA id XM_026944620.2
length 4041
RNA type mRNA
GC content 0.51
exon number 26
gene id cep135
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4176531 ~ 4196440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTATGGCAATCCTGGTTTGTGTTGGGCGCCATTTTCAAACAGCTTTACCGCCGCCGGAAGACATCCAGCTTGAAGAGGAAACCAGCTGCAGAGTAGCTAGctacaaacaacaacaacaacaaccaacaTACTGAACTCTAATGCGATAACGtgtgctttaaagaaaaaaaagaaagtgaatcaCAAGCTAATATTCTATACGTTAACAGAAAATGGCGTCCTTTTCGCGAGCGCACTGTAAACAGAGCTAGCTAGTCAAGCTAAGTGCTAATGTGTACGTTAAGCTGCTAGCTAACCAACTAGCCAGTTAGCAGCTGACTAATACGAACACATCAATAAAAAACGTTAAACTGCTGGaacattgctcagagtGTAACCATGAGTACCAACGCAGAGCGGAAGTTTATAAATCTCCGAAAGCGTCTGGACCAGCTGGGCTACAGGCAGCCGCTAGGCATCGAGTCATTGCCTTTGGTTGAAAAGCTTTTTAGTGATTTAGTCCACACCACTGAAAGTCTTCGGAATGCCAAGCTCTCAGCTGGGAAGACCGAAAAGGAGAGTCGGAATCTTGACGCTCTCCTGGAGCCGTATAAGACGGAAAACGCCCGGCTCGTCCGAGAGAACAACGAACTGCACTTAGGGCTTCTCAAATTGAAGGAGGATAAGGATCGAACCACTAGAGAGCTAAAGGCTTTCATCAGGAAACTGGACCACGAGACCTCAGATCTAAAGTTCCTCAACAATCAGTATGTGCACAAGGTCCGCGCCCTGGAGAAGGACAGCAAAGCCAAAAGCGAACGCATTCAGCAGCTCCAAGAGAAGAACATGCAGGCTGTAGTGCAGACGCCAGGAGGGAAAAAGAGGCCAATCCCTTTCAGACGCCAGCGGATGCAGATAGACGAGCTCCTCCCTGCCTCCCGTGGCCTGACTTCTCCAGCTGTGGCACAGCCTGATGACCCGTACATTGCTGACCTTCTCCACGTGGCCGACAACAGGATTCAGGAGCTTcagcaggaagtgacatcactgaaATTAGATCTAGAAAGAGCCCAGGGGGGAATCAAGCACCTCAACACTCAGGTGGAAGAACGAGATAAAGAGATCGAGCGCCTGAATCGGGCTCTAGATGGAGGACGACCATACGATGTCATCTCTCTGGAGGCTCAGAACATCAGTAACGAAAAGCTCATTGCTCACTTAAACTTACAGATTGAGTACCTGCAGGAGACAAACAGGGCTCTGGAGCAGAAAGTGGAGGAActacaacagaagaagaagactgTTTCCAGTGAGGTAGCTGGCCTGAGCGCCAGGAACCAGGAGCTGTGCAGTGAACTCACCCAGATAGACCAGCTCGCACAGCAgttagagagagacaaagagatggTGTTGGAGACGGCTGACATGGAGCTGCAGGAGGCCAGGAAAGAGATTCAGCGGCtgcacagacaaacaaaagaactggaAGAAGTCATCTCTAAATTAAGACAGAGCCTAGCGGAAAGCAGTCATGAGAAGGACCGTCTGAAGGATCAGCTATCGGAAGTGCAGGAGCGAAATGTGAAGATGGAGGGATTGATGAATTTCCTGGAGGAGGAAAAGACAAGACTGCAGGAAAAAGTAGAGAGAATGACGCAAGCTGATAAAGTAATGATTTTAGAATTGGAGCGCATGCGTGCTCGGCATGGCATCTGTGGCAAAGAGCGATCTCCATCACGATTGGACGCTTTTGTAAAGAGTTTGGAAGAAGAAAGGGACCACTACAGACACGAGGCGGAGAAATATCGAAAGACAAGAGGTGGGGCAGACAGTGTCAGTCCTTCCAAGAGCAGGAGTCCCAGAGGGCGTGGGAGCTGGCCAGGAGAGAGTGCAGACACTGAGCTGTCTCGTGcgctaagagagagagatgagctgCAAGCCATGCTGCTGGAATTTGAGAAACACATGGAGGACATCCAGATTAAAGTCAAACTGCTCACCACTGAGAGAGACCAACTCAGTACTCAATATCAGCAGGCCCAGGAGGAGCTGCAGAGTGTTCGGAGCAAGTTAGCATTTTCTCCTGAGCTGcagcagagagtgagagaggagagagagcaggCAGACACTGAACTCCATAAAGTCACAACAGAAAGAGACGCTCTCCGCGACAGACTCAAGGTGGCTCAGACTTCAgctctgacagacagacagcaggaggaGATAAGAATAATGGAGCTGGAGAACACTGTTCAGATGCTGGAGAGAGAGCGGGCGGACCTGCGCACTCAGGCAGCTGTGTTAAAGGAGAGCCGTGTAGCCCTCGAAGAGGAGCTGAAGGGCCGCTCAGCAGCCTTGCTTCAGAGCGCAGAAGAGATGGCGCAGCACAGGTCTGAGAGCAGCGCTCTGAGgCTGTTGCAGGAGCAGATGGAGAAGTCTCTCTCTGATGTTCAGCACAGATTGTCTGTAAAGGCTAGCGAACTACAGGCAGCTCACCAACAAATTGACAGATTAGAGGAGAGAATCActGAGCTGAGTAGGAATGGGTCTTCTCAGAAAGACGAGGTGGCAGCGCTGCAGACTGCCATAGCATCTCTGGATCGAGAGAAGGACATTCTGCAGGAGGCAGTGGACCAGAAGGCAGAGAGCATGGTCCTGCTGCAGGACCAACTACACAAGAAGGAGAAGATGCTCACAGAAGTTCGCGTCACCATAACAGAAATGGAGAACTCTTTAGAACAGGTAAAGGGGGTTCTGAGCAGCCGCGAGCGGGAGATAGCTAGTCTGCGCAGACAGCTAGATCAGTCGCAGGAGGAGCTCTCGTCAGTCAGCCGAGACAGAGAGATTGCACTGAGAGAGAACCGCCGACTGCAGGACGACCTGGCCACCATGACCAGAGaaaaccagGCAGTGCACAGAGAAATGGAAGAGGCtctgagagagagggacgagCTAAAGATGAGAGTTCACTCCTATATTTCTGAAGTGGCCAAGATCGAGAAAATGATGGCGGCTAAGGAACAGGAGAACAGGGAGATGTTGGAGCGTTTCCGCTCGGCACACATGGACGTGGAGGAGCGCGAGCTAAAACTGCAGCAAGCCGAGGGTCTCAACAACTCTATCAAACTGGAGCTTCTCTCCTCTGACACGGAGCGCAGACACCTACGAGAGAAAGTCTCCCTGCAGGACCGAGAGATACAGGAGCACATGAATGCACTGCAGGCGTATGAGGCTCAGGTATCGTCTCTGATGCGGGCAATGTCTCGGCTGGAGGAGGAGCTGCAGTCAGCACGGGCCGAGAAGGCATCAGTACTAGCTGATCTGGCATCTGTACGAGAGCTCTGCGTTAAACTCGACTCCAGCAAAGAGCTGACCACACGTCAGCTCGCTGCCAAGAGTATGGAGCTGGAGAGGGTGACTGGTGAGCTGGATGATGTACGTTCAGAGATGGAGCTCCTGAAGAAACAGCTGGCTAGTGAGAAGGTGACTgtgcgtaacctggagacgctGCTGTCCACCAACCGACAGAAAGAGTTTCAGAACCACCTCAGTGCAAGTGAGAGGGAGTCGGAGCTGAAAGTGCTCAGAGACCGCCTGGCTCTCGCAGACAGCAAAACGGCAAGTCATGCTAAGGAGGTTTCTCAGCTGCGTGGGAAAATGTCTCAGCTCCAGACAGAAATGGATGTGCTGAAGAGGCAACTGACAACTGAGCGCTTTGAGCGGGAAAGGGCAGTCCAGGAGATGCGAAGACAGGGTGTGTCTTTTTCTTCACTGCGTAGCTCCTCCCCCCTCAGTACCTCACTCAGTCCCCGCCCATCGTCCCCTGAACCTTCTGCCTTACGCACACCAGAGCGCTTAATTGAAAAATCACCAGAAAGaaatgtgaGCTTTAAGGactagagagaaaaaaacaaaccctgaGGATCTTCAGAAAGTGGGCAGCAGAAGGAGTTACTGCCTGGGAATGCTGTTCGTAGGTCATCCTTCTTATTGTGAATTTGGTAGGAGAGGTCATTTTATATCTGTTTCTGCTTAAAGTACTTCGTTCCATTGTGgcttga

Function

GO:

id name namespace
GO:0010457 centriole-centriole cohesion biological_process
GO:0007099 centriole replication biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342961 lncRNA upstream 102567 4061818 ~ 4073966 (+) True G289530
TU342957 lncRNA upstream 102567 4062764 ~ 4073966 (+) False G289530
TU342967 lncRNA upstream 106166 4054457 ~ 4070367 (+) True G289531
TU342965 lncRNA upstream 106818 4054457 ~ 4069715 (+) False G289531
TU342971 lncRNA upstream 106818 4054457 ~ 4069715 (+) False G289531
XR_004580146.1 lncRNA downstream 42587 4239026 ~ 4243951 (+) True LOC117599777
TU343070 lncRNA downstream 52160 4248599 ~ 4279496 (+) False clocka
TU343078 lncRNA downstream 68944 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA downstream 123022 4319461 ~ 4330272 (+) True G289619
TU343090 lncRNA downstream 132409 4328848 ~ 4338299 (+) True trnad-guc_17
XM_026944445.2 mRNA upstream 38972 4124058 ~ 4137561 (+) True aasdh
XM_026944446.2 mRNA upstream 38972 4127301 ~ 4137561 (+) False aasdh
XM_026944441.2 mRNA upstream 61078 4101669 ~ 4115455 (+) True ppat
XM_034313865.1 mRNA upstream 131260 4024888 ~ 4045273 (+) False hook1
XM_034313840.1 mRNA downstream 39388 4235827 ~ 4238921 (+) True nmu
XM_034313929.1 mRNA downstream 51891 4248330 ~ 4309929 (+) True clocka
XM_034313932.1 mRNA downstream 51891 4248330 ~ 4309929 (+) False clocka
XM_034313930.1 mRNA downstream 51891 4248330 ~ 4309929 (+) False clocka
XM_034313931.1 mRNA downstream 51891 4248330 ~ 4309929 (+) False clocka
TU342966 other upstream 106818 4063635 ~ 4069715 (+) False G289531
trnad-guc_14 other upstream 188410 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 196748 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 808761 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 811131 3365278 ~ 3365402 (+) True LOC113546887
trnad-guc_16 other downstream 131032 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 132393 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 137119 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 141464 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 153369 4349808 ~ 4349879 (+) True trnad-guc_22

Expression Profile