RNA id: XM_026944629.2


Basic Information

Item Value
RNA id XM_026944629.2
length 2809
RNA type mRNA
GC content 0.48
exon number 9
gene id fam20b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4561161 ~ 4581781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATGCACTGCAACAGTGTTACTGACATGTtaaatgtcttttcttttctaaatcaGGAAGCTGATGCATGAGAAAGAAATGCATTCCAcgaataaatctttaaaatgagTGCATAACTTTGGGTGCATTCATATATTTCCTAATCATAATCTCGGTTATAGTACAGGTTCACTTTAAGCAGAAAGGTGACGCGTACCTCGCTTGAatggtgtatacacacacacacacacacaagcacaagaCGGACATGATGGGACGCGTTTGCACAGCGGATTAATCAGCTGCATTAAACCCCAACAGCGTTATATTTGTGTAGAAAAGCGaggagaaaaaaaagggtgcGCAAGATAGAGGCATCAGTCACATACTATTGAGTGAAGGACCTTTTTTCCGGCCCTCCATCCTCGATCATAAccacagaagaaaacaaatattctAAAGCagCGCCTCCTTTTTCCGCTGTGAGTGTTCTCTCTGGAGGTGCACAGTAGTCAGGCTCTGCCATGCCCAGGGCGTGACCCCTCGTgtttccttctcctcctccatcatgaAGCTGAAGCAGcgtgtggtggtgttgtgcggtgtgctgctgctgctgggccTGGCCAAGCTCTTCCTGCTGGATGGAGGCGAAGGCTCGGCTGCCAGCCGCCGTGACCTGCGTGCCTTCCGCAAGATGGAGGCGAGCCTAGCTCTGGCCAAGAACGcccgtctcacacacacgttGCAGTCCCCCTGGGAGGTGGCGTCACAGTGGGTGGGGCCACGCGAGGTTTACCCAGATGAGACACCTGAGCTGGCCGCTGTGCTCAGCGCCCTGGCCAGCGCCCGTATCCAGAGGGCCGACGTCGGCTACAAAGGCACCCAGCTGAAGGCACTTTTGGTGCTGGATGGAGGACAGAAGGTGGTGTTCAAGCCCAAGAGGTACAGCAGAGATTATGTGGTTGAGGGAGAGCCTTATGCAGGCTATGACAGACATAATGCAGAGATCGCTGCCTTTCACCTGGATAGGATCCTGGGCTTTAGGAGAGCACCTCTAGTGGTGGGGCGATTTGTGAACCTGCGCACGGAGATAAAGCCTGTTGCCACAGAGCAGCTACTGAGCACATTCCTCATGCACGGGAATAATACCTGCTTCTATGGGAAGTGTTACTACTGCAGGGAGAGTGAGCCTGCATGTGCTGAGGGTGACATAATGGAGGGATCAGTGACACTCTGGCTCCCTGACGTCTGGCCACTGCAGAAACACAGACATCCATGGGGACGCACGTACAGAGAGGGCAAACTTGCCAGGTGGGAATATGATGAGAGTTACTGTGAAGCAGTAAAGAAGATGCCGCCGTACGATGCTGGTCCACGCCTCTTGGACGTGATTGACACGTCTATTTTTGATTACCTAATTGGCAACGCGGATCGGCATCATTATGAGAGTTTCCAAGACGACGGCGGAGCCAGCATGCTCATTCTACTGGACAATGCTAAAagTTTCGGGAACCCAGCTTTAGATGAACGAAGCATTCTGGCTCCTCTTTATCAGTGCTGCATGGTACGTGTGTCCACCTGGAACCGATTAAACCTGCTGAAGGGCGGAGCTCTGAGTTCAGCGATGCGCCAGGCTACAGCCCACGACCCTGCCCACCCAGTTCTGACTGAGCCTCACCTCGCAGCCCTCGACCGCCGTCTCAGCAGCGTCATAGCCAACATACGCCAGTGCATAGAGATGCAGGGAGCAGAGAGCACACTTATTGAAGACCGCATGAACCTGCCTCACCCTTAAACACatccaagagagagagaaagagagagggaggtagCATTTTAAATTGAGTTGAATGCTGCCTGTCTGCCTTTAGAGGCTCACTTCCTGCATTTGCAGCATTGCAAGGAGACCTTAAAAACTGTTGGAAGTTACCTCAACCCAAGCAGGAAGTTGTCTCATAACTCATTAACATTGATGCAGACCCTAGTTTCTCCACAaaccaaaaatgttattttctcgagcacagccacacacacacacacacacacacacacacacacacacacactaatctttTTCTCTTCCATATTTTCCCAACATGCATCACACAGTAGGAATAAGTTCACCAATTCCCTTGCAACATTCTTACTTGGCCATGTAATATTTCTTTCcataaatttctctctctctccatgtttaAAAGTGGCCTGTAACGTTGAACATGCCTGAGCCTGTATGGGCTCAGGGACATTCCACAGCAGCTGTGGGGGTGTTCGCAGGCCCGGGCTGCCCCGTACTGGTATCAAGGGCAGCACCAGTGAAATTATGTCACTGACATCACAAATCAAAGCATTAACAGCCTATCTGGGGATAGCCTGTCTACAAACAGATTGTACATAAGCAACTATTTAATGACAATGttgataaacaaatgaatggttttaatgatttaaaagattaatattgAGAGTTACTATGCAGGTTTGcctgttttaaaatgtgcagtATGATTTCTGGATATAAACGGGTAGTGGGTGGAAGAAGCTGCTACTGAAGCTCAAAAAGAAGATGGAGTGAATGATAGCATGAAAAGCTATAAGAGAGAGATATTCACACTTATTCACAAAGCAGTGGTGTGGCTACATGTATTCATCCCAGCCAAATAGGAGTCATTTAAAGAGCAAGAGCATCTAATTAAACAAGGGAAATCTGGTGTATTTCTGTATGTTTGGACTGAAAGGCTACTGCCAGATCAACCATTTCCTGATAAGATTGAGGGTCCCTGCTGTGTGAAGATCttttgaacattaaaaaaaccttaaaattcA

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K20825 FAM20B; glycosaminoglycan xylosylkinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343392 lncRNA upstream 21321 4529928 ~ 4539840 (+) True G289866
TU343335 lncRNA upstream 126371 4433235 ~ 4434790 (+) True G289831
TU342943 lncRNA upstream 198073 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA upstream 208360 4350748 ~ 4352801 (+) True LOC117599675
TU343090 lncRNA upstream 222862 4328848 ~ 4338299 (+) True trnad-guc_17
TU343408 lncRNA downstream 25587 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 42361 4624142 ~ 4627837 (+) True LOC117599674
XR_004580147.1 lncRNA downstream 122881 4704662 ~ 4798444 (+) False LOC113545162
TU343531 lncRNA downstream 149304 4731085 ~ 4731312 (+) True G289989
TU343537 lncRNA downstream 173725 4755506 ~ 4755735 (+) True G289995
XM_026944414.2 mRNA upstream 3674 4453316 ~ 4557487 (+) True ralgps2
XM_026944565.2 mRNA upstream 110239 4447647 ~ 4450922 (+) True LOC113545289
XM_026944692.2 mRNA upstream 128806 4425634 ~ 4432355 (+) True echdc2
XM_026944426.2 mRNA upstream 141328 4407768 ~ 4419833 (+) False LOC113545214
XM_026944392.2 mRNA downstream 19274 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA downstream 19274 4601055 ~ 4609601 (+) False LOC113545190
XM_034313899.1 mRNA downstream 60012 4641793 ~ 4642356 (+) True LOC117599796
XM_026944657.2 mRNA downstream 234906 4816687 ~ 4822011 (+) True plpp6
XM_026944557.2 mRNA downstream 241257 4823038 ~ 4831944 (+) False LOC113545285
trnad-guc_22 other upstream 211282 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 223187 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 227532 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 232258 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 233619 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 360170 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 360170 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 360170 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 360171 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1153692 5735473 ~ 5801693 (+) True usp24

Expression Profile