RNA id: XM_034313588.1


Basic Information

Item Value
RNA id XM_034313588.1
length 3924
RNA type mRNA
GC content 0.49
exon number 17
gene id dab1a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5327165 ~ 5502404 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCTTGAGCAAAGCTTTCTCAACAAATGTGAGAATGTGCGTTCTGGCAGACTCCTTATTAACAAGTgcctgtttctgtctctcaggtgTTTTCTCCACCATCGCCAGCCTTATTATGGAAAGCAGATGTGGAGGAGCTGTGCATTCTAGAGAGCTATAAACAACTCCAGAGactgcatgaaaatcccaggacatcagcagtttctgaaaactAGACCATCTATATGCCTAGATTATCTTCCTGCAAAAGATCTCACTGGCCACTGCAGGGAGAGCTCGAGATGCAGCGTCGAGGCTAGAGGCAGCGGCAGAGTGAGCGTGAGGCAGTGGGGAAGCCCCTCTGGATGAGCCAGCCACAGGCACCCAGCCGCACAGTACAGGAATAACCACTTAATATGTCAACAGAGGCCGAGCTCCAGCCTGCTGCCAGACCCAGCGTCAAAAAGGATTCCAAGAGGAGAGGGCAGGACCGCACTGAGGCAGCTCTGATAAAGCGCTTTAAAGGGGATGGTGTCCGCTACAAGGCCAAGCTCATCGGCATTGATGAGGTCACCGCCGCAAGAGGAGACAAGCTCTGTCAGGACTCAATGATGAAGCTAAAGGGGATCGCAGCCTCAGCACGCTCGAAAGGAGAACACAAGCAGAAAGTTTTTCTTACAGTGTCCTTCAGCGGGATCAGGATTTTCGATGAAAAGTCAGGGgttCTTCAGCACCACCATGCAGTTCATGAGATTTCTTACATTGCCAAGGATATCACAGACCACCGGGCCTTTGGCTATGTATGTGGGAAAGAAGGCAACCACCGATTTGTAGCCATCAAAACGGCTCAGTCTGCTGAGCCGGTGATCCTCGACCTTCGTGACCTTTTCCAGCTGATCTATGAGATCAAGCAGAGAGAAGAGATTGAGAAAAAGGCTCAGAAAGACAAGCAGTGTGAACAAGCAGTTTACCAGACCATTCTGGAAGAAGACGTGGAGGATCCGGTGTACCAGTACATTGTGTTTGAGGCGGGACACGAGTCCATCCGTGACCAATCAGAGGAGAGCATTTATCAGGTCCCTACCAGCCAACAAAAGGAGGGAGTCTATGACGTCCCAAAGCGACATCCAAATGAACATAATGGCCAGACCAAACTGCTGGATCTGGATGCTGATCTAGTGCTGTTCCCTCAGAATATTCACCAGTTAGAGCTTTTTGGAGACATGTCTACTCCACCTGATATCACCTCTCCCTCaACACCCGCCTCTCCGGCTACCGCTCTAGACCCAACGCTGCTCCATCAGCCCCCCTCAGAACTGTTTGCTGCATTCAACCCTGCCTCTGTGCCCTCAGGTTATGTGACGATGGGAGCAGTGCCCCCGGGCTGGGCACAGCAGCAGTTTGCAGCCCAGGCACCGCTGGCGTTTGGAGTTCAGTCACCAGTTCCCATGGCTCAGGTGTTACCTGGTGGGCAGCCGCTAATATGGGGCCAGGCCAACCTCTTCCCCGCCACGCAGCAGCAGTGGGCAGCTATGGCCGGAGCCCACTTCTCACCTGCTGCTTTTGTCCCTGCACAGACCATGGGACCACTCCCAGCTGCTATGTTTCAGGCACTGGCACCCATGCCCATGGCAGCAGCATGTCCCACCGCTGGCCCTTCCCCAGGCACGCCAACCGCAGGCCCCTCAGCTTCCACAGCCTCTAGCCCGCAACATGGCGAGCGCTCAATGCCTGGACAGACCAAGATGAACAAGGAGATGTTCAAGGACTTCCAGATGGCCAAGCCACCGTCGACAGGTACGCGTAAGAGTGAGCAGCCCAGTCTGTCGTGCACCACAGACGCTTTTACCAGCTACTTCAGCCGGGTGGGACTGGCACAGGACAACGACGACTGTGATGACTTTGACATCTCCCAAATGAACCTGACGCCCGTCACCTCCACCACACCCTCCACCAACTCACCGCCCACACCAGCCCCTCACCAGAGCTCCCCATCTAAGGCATCGTCGCAGGCCAGTGACCCGCCCACTGATGATTCATTTGGGGAAGCGGAGGGCAGCCCCAGCCGCAGCGGCGAGGAGGACACTGCCGGAGATGCTCAGTCTCCGAGTGTGAGTGAGCCTCAAGCAGAGCCAGGTGGCTCTGAGCCGGACAGTCCTCAGGGGAAGGACCCTCTCTACGCCAAGATCTGCAAAGGGAAGAAGTGAAGGATCATGGGAAGACTGCACACAACTGAACAGTGCTCAGGGGGGAGCAAGAGACCAAACCCTTAGAgccgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcatgtatgcgtgcaagagtgtgtgtgatcaagagaatatgtgtgagtgtaagtAAGAGGAATGGAAGTGACAGGCTGacgacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgcatgAGAGTGGATGGTATTCAGAGCTCACCTGTGATGGATCACCCCAGCCTCCTTGGCCTTCAGTCAGCCTCTGGATCTCACTCTGTCTGGAGaactcttctttctgtctttccatcGAGCTCTTTGTTTGTGTCGCACCGTGTTTCCTACACTCATAAACTGAACGTGGAATATTATACACAgctgatgatcatgatgatgatgatgatgatgatgatgacgacgattatgatgatgatcttcttcacactctttctctgctcactctgtcattcttttgctctctttttctgtttcactCTCATGGCATCTAGCCAAGGTAGTATGAGTACAAAGTCTGAGAGGTGCCTCAttccactgtacacacacacacacacacacacatacacacacgctcactcaAGTGAGAGTTCAAGAAATCACTGCTTCATGATCCTGCATAATCCCAGTCTCTGCACTGTCATCTCGCTGCATAGTCCAGGCCAGAGCAACCGATTACAGAGTAATCCATTTGATCCATCCATAGGATTATGTGATTCATCCATTtgggtttgtttggttttgctcCCTGATCTATTTGAGATTCTGCTGCTAGAGAGCTatgcagaaatgaaaaaagagactTCGTCTTTCTCTGTGGACCTTTCAGACAGAGATCTGACTCAAGGAGTGACTTTGccaaaatctctctctttctttcttttttgcggGAAAGACTTCTGAGCAGCTCATATGGAGAAGACATTGCGACAGTGGATGTTGCCACAACAAGCTGAATCAGTGACTGAACTGTTCCTTCTCTATAGCTTTTGTACAAtactaataagacaaaaaaaaacatgacattgaaaaagggatttttattttataagtcAGTGGAGCCCTTGAGGCCGACTTGAGACGTGTTTTAAGGGTAAACATGGCTTTAAGGCATCAGATCATTGGTTTGCCAAATTCATTTTGTAAATAACAGTAATGCCAACAATAatgctgatgatgataataGTGTTCATTCTTTCCGCCGGACCTCTGTGCCATAAAATAGGCAGGCTTAAGTGATGCAAGCTCATCATGGAACCCAAGCAATATCTACATGTGTCAAAAATTCCCCTCTGTGGTTTACATTGCTGTCAACACCTGTGCATGTTTGGTTTATTAACAATGTGGCGCACATCCTTTGGGTACAGTGAAGAAAAGCAGGCAGTTAAAATACCCCAAATGTCATAGCACAAGGCTCATGATAAGATAATTGAGTAAGTAAAGGCTGACAGAGTCTCCAGTAGATAAACATGTTGTAAATAACTGGGAGCAAGCGATTGTGTTTCCTGAAAGTTAAAACTTCATAATTGATCCTTAAACTCATTTCAAAAGGATACAAACTCTCcaatatacagttctgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcgaacatgtcttcaaaaataatgaaattaaatgtttcttcatttaaaaaatactata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404604.2 lncRNA upstream 20263 5302630 ~ 5306902 (+) True LOC113545370
TU343799 lncRNA upstream 73442 5253517 ~ 5253723 (+) True G290192
XR_004580165.1 lncRNA upstream 176240 5147185 ~ 5150925 (+) True LOC117599804
TU343587 lncRNA upstream 419353 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 426817 4898967 ~ 4900348 (+) True G290030
TU344029 lncRNA downstream 41714 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 77414 5579818 ~ 5588495 (+) True LOC117599803
TU344031 lncRNA downstream 144973 5647377 ~ 5655687 (+) True G290419
TU344180 lncRNA downstream 230327 5732731 ~ 5734300 (+) True G290562
TU344187 lncRNA downstream 299394 5801798 ~ 5804340 (+) True G290566
XM_034313881.1 mRNA upstream 229688 5079221 ~ 5097477 (+) True oma1
XM_026944478.2 mRNA upstream 249247 5066310 ~ 5077918 (+) True mysm1
XM_026944660.2 mRNA upstream 263016 5052030 ~ 5064149 (+) True scrn2
XM_034313408.1 mRNA upstream 278723 4998148 ~ 5048442 (+) False suco
XM_034313904.1 mRNA downstream 3435 5505839 ~ 5520633 (+) True LOC113545193
XM_026944339.1 mRNA downstream 40552 5542956 ~ 5575570 (+) True plpp3
XM_026944340.1 mRNA downstream 40552 5542956 ~ 5574980 (+) False plpp3
XM_026944585.2 mRNA downstream 233070 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA downstream 233070 5735474 ~ 5801693 (+) False usp24
XR_004580098.1 other upstream 347765 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 347765 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 348310 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 353104 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 977286 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 233069 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1510338 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2086964 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2380814 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2382241 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile