RNA id: XM_026944651.2


Basic Information

Item Value
RNA id XM_026944651.2
length 1705
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113545337
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8549942 ~ 8557745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTGATCAGTTCTCAGCAGATGGATGGTAGATATGCGAGTCGGCTCCCAGCCTTCACCTAGAAGAGCCGGCTCAAAGAGTCGACCTGGTGGCGAATGACACTGCtggataatcacacacacacacacacacacacacacacagctctgtgcgcCGCTGGCTGCAGTCCGTTTCACACGCTTTGGAAATACACAAAGCCAACTCCTTATGGATATTTATTCTTCCAAACTTTCTCCCGCGGTGGATTATGGAGCCGGGGCCTTTCTGCTGCTGATAGCAATTTTGTCCATTGTGGGGAATTTCCTGGTCCTTTTAATGGCATACAAGAGATCTTCTCAGATGAAGCCCGCAGAGCTCCTCAGCGTGAACCTGGCTGTGACAGATCTTGGTGCGGCAGTCTCGATGTACCCTCTTGCTGTAGCATCATCATGGAATCATTCCTGGTTAGGGGGTGATGCCACCTGTATCTACTATGGCTGGATGGGGTTCTTTTTTGGCGTAGCCAGCGTGGCTACCCTGACAGTCATGGCTGTAGTGCGCTTCACTGTATCCATGACACTACAGTCTCACAcGGAGAAAATCACTAAAAGGACGGTGCAGGTGATGTTGGCAGGCACATGGCTGTATGCTCTCTTATGGGCTGTGTTTCCTTTGGTTGGTTGGGGTGTATATGGCCCTGAGCCCTTTGGCTTGTCCTGCACACTGGCCTGGGCAGAGATGAAGGAGCACAGCCCATCCTTTGTCATCAGCATGTTCGCCATGAACCTGGCCATGCCTGCCCTCATCATCGTCTGCTGCTACTTTGGTATCACCCTCCGACTCCATTTGTCCTACAAGTCTCTAGAGAATGGCAATTTCATCCAGAACAGAGTTAAGATGCAGCGCCGTCTCATGTTGATTGCTGTTCTGATCAGCGCTGGTTTCATTGGCTGTTGGACACCCTATGGGATAGTGAGCTTATGGTCAATCTACTCAACTTCTTCCATCACTCCCCATGTCAGTATGTTGCCCTGCCTCTTTGCCAAGACCTCCACTGTGTACAACCCACTGATCTATTACATCTTTAGCAAGTCTTTTAAACAGGAGGTGAAACAGTTTCTCCATGCATGCATTAGATCCCAGGCATGCCGTGGCTCTCAGCCAAATAACCTCACAGAGAATACAGTctacatggtgtgtgaaggaaCCACAGTCAGAGAAGACCTGCATATGGAGCACATGTTTCAAAAGGACAGAGATAGATACTGATACGCAATTCAGACGTGTGAAATATCAATAACTCTGGGATTTCTTTTCCACGTACTCatggattttattcatttccctGTGTGTCTGCTTGTTTAACCAGTTATTTCTTGGGACCAACAATACCCTTAGGTTGGCAGTGTTGCcaagtaataaaatgaaaatcatatgaacattaaaatcatttattaaagcaaATGCTTACCATAAATACACCAAGACACAtgatcaaatatttaaattgataataaataaatgtgtccagTTTAAAAGTCATTGATATTTATTCCAGGTGtaacagagagatggaggaaaaataagaaaatgaatagatgactttatttaaaatattatttagatcAAATTTATATGTAATTACACAATTATGAGAAGCCAGCATGCTAAATTGCAGTGGACAtatattattaccattattataaTTGTCAATATGTTACAACC

Function

GO: NA

KEGG:

id description
K08385 OPN5; G0-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580077.1 lncRNA upstream 15442 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA upstream 15442 8488969 ~ 8534500 (+) False LOC113545369
TU345980 lncRNA upstream 39166 8510569 ~ 8510776 (+) True G291996
TU345955 lncRNA upstream 76214 8470947 ~ 8473728 (+) True G291976
TU345951 lncRNA upstream 84905 8464837 ~ 8465037 (+) True G291972
TU346061 lncRNA downstream 25205 8582950 ~ 8583477 (+) True G292072
TU346063 lncRNA downstream 26474 8584219 ~ 8585902 (+) True G292074
TU346095 lncRNA downstream 147309 8705054 ~ 8705244 (+) True G292102
TU346720 lncRNA downstream 850747 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 856806 9414551 ~ 9415576 (+) True G292643
XM_026944480.2 mRNA upstream 90214 8446316 ~ 8459728 (+) True clic5b
XM_034313589.1 mRNA upstream 244343 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA upstream 244343 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA upstream 249203 8296614 ~ 8300739 (+) True LOC113545195
XM_026944385.2 mRNA upstream 359361 8173162 ~ 8190581 (+) False esr2a
XM_026944368.2 mRNA downstream 42666 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA downstream 42880 8600625 ~ 8605983 (+) True wdcp
XM_026944500.2 mRNA downstream 78705 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA downstream 78705 8636450 ~ 8701451 (+) False atad2b
XM_026944503.2 mRNA downstream 382647 8940392 ~ 8947001 (+) True gzf1
TU345969 other upstream 40459 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 475505 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 661106 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 661862 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 662343 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnak-uuu_18 other downstream 333923 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 435768 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 516283 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1346005 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 1601210 10158955 ~ 10161751 (+) False LOC117599798

Expression Profile