RNA id: XM_026944657.2


Basic Information

Item Value
RNA id XM_026944657.2
length 3747
RNA type mRNA
GC content 0.45
exon number 2
gene id plpp6
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4816687 ~ 4822011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACGCGGAAAGGGGTTTTTAAAGATGGCGGTTCATCACAGTGCGGGTGGATGCGAGCACAGGTGTCATCTGTAAAACGATGAActgaaatttgaattttttttaaaaataacagtgaTTTAGAGCGACATATTTGTGCACGATGCCGTCCCCGAAGCCCGTCAGAGCGAGCAGCGCGCGCAGCAGCAGTGTTTCCGGTGTCGGCGGCGGCAGCAGCGGGCGGTACGAGTTCATGTCGCTGACCCGGACACCGCCACTTTCTCCTTCCCCGCTTCCGCACCTCCTCCAAAGGCAGGGCTCGGACCCTACGACAGCGCGGCTCCGTGCCTCTGAGAGCCCGACCCGGCGGCGCAGGGGCTCCGCTTCCTCCACCGCCTCCACGTCATCGACCGGCGGCGGCGCGCAGCAGTTACCGGAAGACGACTGCATGCACCTCAACCCGTCCATCATCAGCGTGGCGCTCAGCTCTCTGCTCGCCGTGGACCTGTGGCTCTCCAAGCGGCTCGGGGTGTGCGCGTGTGAGGAGGCGTCATGGGGAAGCGTGCGGCCCCTCATGAAGCTGGTGGAGGTTTCCGGACACGGTATACCGTGGCTCATCGGCGCCGCGTACTGCCTGTACAAAAGCGACAGCGCCGCGGGGCAGGAGGTCCTGCTCAACCTGCTCATGGctttgGTGCTGGACCTGGTGCTAGTGGCCATAGTTAAAGCCGTGGTGCGTCGCCGGCGTCCTGCTCATAACCGTATGGACATGTTTGCCACATTCTCTGTGGACTGCTACTCCTTCCCATCAGGCCATGCCACTCGGGCTGCTATGTGTGCACGCTTCCTGCTGGCCCACCTGGTTCTTGCCGCTCCACTGCGCGTGCTCGTCATGCTCTGGGCGGGCTTTGTTGGCCTCTCCCGGGTCCTCCTCGGGCGTCACAACGTCACAGATGTGGCCTTTGGCTTCTTCATGGGCTACTGCCAGTACAACCTGGTGGAGGCGCTGTGGTTGTCACCAGCTACGCTGCAAAACATGATGGGTCAGCTGGAGTGAAGCCAGAAGGAAGCAGTAGAGATGCTGAAATTGAAGATATTGAAATTGAAGAAAAGAGATTCCATAAAAGACTTGAACTGTAGGCACTGTGATAGTAATAATTCCATATCATCACTAATATATTATTTGTGAATTGGCCACAGTTTTAAATTGTGTATGTCTACTATATATACATGGaaggtaaatgtaaaaatgtatccACTCTTCTGCGGGTTTAAGAGGAGTGTCCTGGAGCAGGCAAACTTATCATATAAGTTGGGGGAAAAATGGGCTTAAGTCATGGTCAGAAAGAACGACCTCTGATCTCTCCAGACCGATACTGCTGTGCCACTGTGTAATTACTGTGTTCAGAATCACTTTCATAATCACAAATCACtttaaaaatcactttaaaaCTCCTCAAAAGTGATGTAAATTTAACAAGTGTATAACATTAGTAACTTGGTATTACCTGGAACActagaaatgaaaacaaaatattcttctttcagtttttaatgtattttcagaaaattaatGTAGGGGCAAAAATTTCcaatatttctttgtgaatgGGTAATATGGgttaatgttcatattaatCATTAAGGTGTAATTGGTTACATTTTCAATACTGAAGAGCTCTGAGTGGCTGCCAGTACCTGATACCGACCTGGTACTGTCTGCAAGCTGCTCTTACAATGTTAAGTGATTCATCACAGGCATGAAGCTGAGAAGCATGCTCTAAGAAGCATGAGTCCTGTCAGTAAACATCACATGCATTTGTAACACTAAATACATCAGTAAATCAGATTGGAAACTATGCATTGGAAAAATCCAATTCAGCGTTTCTGTACTCTACTGAATCTGTGCATCCCTAATATTTAAGCATGTGGGTTTGGTGAACCTCACTTGTATTGTCATTAATGCAGTCgatgtgtgtggttgtgtttaTCGTCTCTTTACTGAAAGATTTTGGATAATGCAGAGAGTTTGCACTATTTTCTCTAATCACATGGTGTTCTTTATTCTTACATTTTAGACCACAATGATTTATGAAGCAgactgttttattaaatgtacttcatttttgttcttttacaGAAATGGAATTATATTCACTgcccactttaataggaacacctgtacaccccACCCGTTCATTCACGCAATTATCCAGTAAGACAACTGTGTGGCAGGAGGAGCTACAACAGTAGAGGACCACATCAGGtcttcactcctgtcagccaagaacaggaatctgaagctataGGGGCCGCAGGCTTATCACATccggacagttgaagattgaaaaGAGGCCagctgatgtttttccaatcttctgtccagtttcagtgagcttGTCCCCAGTGTAGCCTCACATGTTCTGTTCCTGCGATGAGTTGTgccattctgagatgcttttctgctcaccacggttgcaaagagtgagtcactgagatcacattttttccccatcctgaagctcttgacctgtatctgcatgattttatggaatccgctgctgccacatgattctctgattggataattgcataaataagcaggtgtacagatgttcctattaaagttgCATGCTTTTCTATGTTTTTATGGTTACATTCTGTGTTTTCATGTTACAATAGCATTTAAGTGTCCTTCACTATCACTGGcagtttaatcatttaataactGGGCTGATTGATGCTACTCTTAAGTCAATACgcatgaaaaacagaaatgtacaaaaacagGATTTTTATTTGATACCTCCTTAAGCAGTTTGGTTAAAGGCTTTATGCTGAAGCTAACAAAAAAGTGCTTAAAGCAGGTGCTCTGTGTGTTGTGGTTATGCATGCTGTACTCAGACACCTCCCCTCCTTTGAAGAGGAGTTCAGTAGCACCCAAAAGCCATGGACATAGAAGAGGTATTTCCTCATAAAGGAATGATATAACCAGTTTTGAGACTCTCAGTCACTCGTCTCTTATcttatttgtttctttcattccCTCCTCATTCTCTCGTCATCTACATTTTGTGCTTTTCAGTTGCACCTGTAGCACTCTGCTGATGTAACGTATAAGATGCTGGAGTTAACTGATTTACAGATGCTCTCTCAATGTAGTCCTGAGGTGAGAAGCCTCTGTAGCTCAACACTTGGCAAGTATATTATCCTAAATAGGTTACCTTATGAGAGGTAATGCATTGCTTACTGTGATGTTGCATGCCATAAAACTGGTAGGGAACCAGTCTTGTTACAGTTTTTGTGGTGCTTTTGACTTGTAATTTTTTGGCAATAACAGCTGTTGTTTTCATCACTCCGTGCATCCTCGGGGCTGCAGCATTAGAGAATGAGGAACAAAGGCTCACCAAAGGCACTTTGTATTGTATGAActgcaataatttttttccGGTTGGGTTTATTTACCAGGGACCGTCTTTCAGGAGTGTAAGGCTGGGCAGTGAAGGTTCATGGCCTGTATTCACACGTATCTGGTTCAATTTCTGTAGCTGTGACCAGTTCAGTCTGTGATCTCAGGTCTGCCTTCCGGTCCTGTGATACTTCATGGTATGCCTTCATCTCTGGTGACTTCACCAGCTATTCACAATggcataaattataaatgtctaaatatatatactgcTCATGGTTGTATAATGTAAAATCTTTTGTCTGTGTCTAAAAAATATGCTGCAAAAAAAGTTGAAAGTTATAAAAGTAATATATGAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K22904 PLPP6; presqualene diphosphate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343551 lncRNA upstream 1891 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 1891 4812169 ~ 4814796 (+) True G290009
TU343547 lncRNA upstream 10107 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 13659 4802813 ~ 4803028 (+) True G290004
XR_004580147.1 lncRNA upstream 18243 4704662 ~ 4798444 (+) False LOC113545162
TU343583 lncRNA downstream 74111 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 76956 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 76956 4898967 ~ 4907812 (+) False G290030
XR_004580165.1 lncRNA downstream 325174 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 431506 5253517 ~ 5253723 (+) True G290192
XM_034313899.1 mRNA upstream 174331 4641793 ~ 4642356 (+) True LOC117599796
XM_026944392.2 mRNA upstream 207086 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 207086 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 234906 4561161 ~ 4581781 (+) True fam20b
XM_026944414.2 mRNA upstream 259200 4453316 ~ 4557487 (+) True ralgps2
XM_026944557.2 mRNA downstream 1027 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA downstream 1330 4823341 ~ 4831944 (+) True LOC113545285
XM_034313461.1 mRNA downstream 1330 4823341 ~ 4830815 (+) False LOC113545285
XM_026944559.2 mRNA downstream 1330 4823341 ~ 4830815 (+) False LOC113545285
XM_034313935.1 mRNA downstream 13075 4835086 ~ 4846034 (+) True LOC117599802
trnad-guc_22 other upstream 466808 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 478713 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 483058 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 487784 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 489145 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 119940 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 119940 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 119940 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 119941 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 913462 5735473 ~ 5801693 (+) True usp24

Expression Profile