RNA id: XR_004580098.1


Basic Information

Item Value
RNA id XR_004580098.1
length 3532
RNA type misc_RNA
GC content 0.49
exon number 24
gene id dnm3a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4941951 ~ 4979400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAACTGTCAGTGTTCcagctgagacagagagagagagagagacagagagagaagagggaaaaGAGCCGAACCGAACCGAGTTCAGCCGAACTGGAGACTTTTACCGGTGACAGATTAGTTTTAACTTCTTGGTGTCAGTGCTGAGGTGTGGAAAATAAAGAGTAAGAGTTGAAAGCTAGCTAACTTTCTCCGTGTTTGCGTCCAGAACCTGGATAGTGACAGCCAAGGCGAGGACGTGtagaggGTGTTTCTGTGGAGTCATGGGGAACCAGGGCATGCAGGAGCTCATTCCGCTGGTGAACAGACTCCACGAGGCGTTCAGTGTCCTCGGGCGGAGCTGCAGTCTGGAGCTGCCGCAGATCGCCGTGGTGGGAGGACAGAGTGCAGGCAAGTCCTCCGTCCTCGAGAACTTCGTGGGCAGggaTTTCTTACCGAGAGGCTCAGGGATTGTCACCCGAAGACCACTTGTGTTACAGCTAATCAGCTCCAGCTCAGAGTATGCTGAGTTCCTGCACTGTAAAGGGAAGAAGTTTACGAACTTTGATGAGGTTCGACAAGAGATTgaagcagagacagacagagttaCAGGAGCCAATAAGGGCATTTCTTCCATTCCCATCAACCTACGTGTTTACTCACCAAACGtACTCAACCTGACTCTAGTAGACTTGCCGGGCATCACTAAGGTTCCAGTAGGGGATCAGCCTCCAGACATCGAATACCAGATCAGAGACATGATCATGCAGTACATTTGCCGGGAAAACTGCCTCATCCTGGCTGTCACACCTGCAAACATGGATCTGGCCAACTCAGATGCCCTCAAACTGGCCAAAGATGTCGACCCACAGGGTCAGAGGACCATTGGCGTCATCACTAAACTAGATTTGATGGACGAGGGGACGGATGCCAGAGATGTGCTGGAGAACAGGGTACTACCCTTATGCAGAGGTTACATTGGAGTGGTAAATCGCAGTCAGAAGGACATTGAGGGGAGAAAGGACATCAGTGCGGCTATCGCTGCAGAGCGggtgtttttcctctctcatcCAGCTTACAAGCACATGGCCGACCAAATGGGAACACCTTACCTGCAGAGGGTCCTCAAccaacaactgaccaatcacatccgGGACACACTACCAGTGTTCCGTAACCGGCTGCAGTCTCATTTATTCTCACTGGATAAAGAGGCTGAGGAATACAGACACATGAACCCTGATGACCACACACGCAAGACCAAAGCACTGATGCAGCTTATCCAGCACTTTGGGCTGGACTTTGAGAAGATGATTGAGGGCTCTGGCGCCCAAGTGGACACCATTCAGCTCTCAGGAGGAGCCAAAATCAATCGCATCTTTCATGAACGCTTTCCCTTTGACCTAGTCAAGATGGAGTTTGATGAGAAAGAGTTGCGGCGTGAGATAAGCTATGCCATCAAGAATATTCATGGGATCAGGACAGGCTTGTTCACTCCTGACCTGGCGTTTGAGGCCATTGTTAAGAAAGAGATAGTGAAGCTCAAAGGCCCGTGTATTAAATGTGTTGATATGGTCATCCAGGAGCTCATAGCCACAGTGAGGCAATGCATCAGCAAGTTAGGGACCTTTCCTAAGCtacaggaagagacagagagaatagtGACCACACATATTCGGGAGCAAGAGAGTCAAACCAAAGACCAGATTTTCCTTTCAATAGACATTCAGCTTTCCTACATCAACACCAATCATGAAGACTTTATCGGATTCGCCAATGCGCAACAGAGAAATAATCAGATTACTAGAAAGCCTTCCACATGGAACCAGGGTGCTGCACCTCCACCTCCCAGTCAAATTGTGATCCAAAAAGGCTGGCTGACCATCAACAATCTTAGTTTGATGAAGGGAGGGGCCAGAGAGTACTGGTTCCTGCTGACTGCAGAGAGCCTCTCCTGGTTTAAAGATGACGAGgagaaggagaagaagtaCATGCTGCCTCTGGACAACCTGAGAGTGCGCTATGTGGAGAAGACCTTCATGTCCAGCAAACATGTCTTTTCCATCTTTAACATAGAGCAGAGGAACGTATATAAGGACTACAGGCATCTGGAGCTCGCCTGTGACACACAGGAGGAGGCAGACAGCTGGAAGGCCTCGTTGCTGCGTGCTGGAGTCTATCCTGAGAAAACAACAGCGGATGGTGAGAGCTCAGTGCTGGATGAGAACTTATCCATGGACCCGCAGCTGGAGAGGCAGGTGGAGACCATCCGCAATCTGGTGGACTCTTACATGAGCATTGTCTACAAGAGCATCCGAGACCTGATTCCCAAAACCATCATGCACCTGATGATCAACAACGTGAAAGAGTTTATCCACTCAGAGCTGCTGGCTCAGCTCTACTCTACAGGAGACCATTCGGCTCTGATGACCGAGTCCCCcgagcaggctgtgcacagagAGCACGTGTTGCGGACTCACTCAGCCCTGAAGGAGGCGTTGTCCATTCTCAGTGAAATCTCCACCTCTACCCTGTCCACCTTGCTCTCAGCCCCTGTAGAAGGTCCCAGGCTACAGTCCAGCATCATTAACCGCGGctctccaTCAGTCCTCTGTGCTCCTAAGAAGACTTCGTCTTGTCCTGGTCCTCCGACTCGCGGTCCTGCTCCTCCTGCCCCTCCTGCTACTCCTGTCCTTCTTCTCCCATCTCGTTCTGCTCCTTCTGTCCCCAAAGGCCTGAAAAACAAAGACTCCCCTCAGACACTGACACGCCCCAACCGATCCGCTCCCAGCATTCCCAGTACAGACTGCCTCCATCCCCTTCCCCCTCTCATTCGCTGGATGGCGGAATCCAGTCAGCACCAGCTATTGGGAGCTTCCTGAAATGACCGCGAACACGACTGACAGGCAAGTGGAGACGCCTCCTcgtcctgattggagACAGCCACCAGCAGTGCCTTCCCAAAAGCCACACGAGCACGAGAGAATCCCAAACACAAAAGGGACAAGGACTGAGTGAGACTTCTTTCACTTCtgccaaaaacacactgagtgTTTGGCCCAACTTTTCTTTAATGAGGGTTTAGAGGTGGTACACTTGGGTTGTATCCAAACCCACCTTCTAATGTACttaatattctgtaaaaatagCAATAGAGAAGCTCAGCTGGTTTTCACTACACTGGTCATATGTTAGTATGCGTTTTCTGCTGTAGCCTGAAGTCGACCACCTCTAATGCCACACCCTTACTCTTAAACATGGTTCTAGATGAGCTGACATAAAGTACAAACTCAGTGAGTCTGATGCCTCGGTTTGTCACTGGTGAGCAATATTCTGCAATATGTTTCATTCACTATGTTGTTTATTCTATACTTGCAGTCAGACTTACTGAAGCCTGTCCTGTTCTGCATAAAAGTCTTCATCTGTTTGCTTTACGTGTTGAATATTCTGGTGTGCGTACGTGATTgggagagagaatgtgtgtgagtgtatgtctaAAGTGctcatttttgtaaataatgccAGAGCTTATTAAAAAGGAACatactatacata

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343587 lncRNA upstream 34139 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 41603 4898967 ~ 4900348 (+) True G290030
TU343583 lncRNA upstream 45564 4896122 ~ 4896387 (+) True G290028
TU343551 lncRNA upstream 127155 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 127155 4812169 ~ 4814796 (+) True G290009
XR_004580165.1 lncRNA downstream 167785 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 274117 5253517 ~ 5253723 (+) True G290192
XR_003404604.2 lncRNA downstream 323230 5302630 ~ 5306902 (+) True LOC113545370
TU344029 lncRNA downstream 564718 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 600418 5579818 ~ 5588495 (+) True LOC117599803
XM_026944353.2 mRNA upstream 2440 4932489 ~ 4939511 (+) True mettl13
XM_034313886.1 mRNA upstream 55450 4859323 ~ 4886501 (+) True prrc2c
XM_034313887.1 mRNA upstream 55450 4859323 ~ 4886501 (+) False prrc2c
XM_026944603.2 mRNA upstream 87226 4848284 ~ 4854725 (+) True LOC113545311
XM_034313918.1 mRNA upstream 88059 4847581 ~ 4853892 (+) False LOC113545311
XM_034313406.1 mRNA downstream 18748 4998148 ~ 5048442 (+) True suco
XM_034313407.1 mRNA downstream 18748 4998148 ~ 5048442 (+) False suco
XM_034313408.1 mRNA downstream 18748 4998148 ~ 5048442 (+) False suco
XM_034313409.1 mRNA downstream 18748 4998148 ~ 5048442 (+) False suco
XM_034313410.1 mRNA downstream 18748 4998148 ~ 5048442 (+) False suco
trnad-guc_22 other upstream 592072 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 603977 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 608322 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 613048 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 614409 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580141.1 other downstream 756073 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 2033342 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2609968 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2903818 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2905245 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile