RNA id: XM_026944681.2


Basic Information

Item Value
RNA id XM_026944681.2
length 1766
RNA type mRNA
GC content 0.46
exon number 4
gene id igfbp1a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5958431 ~ 5961185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGCGCAAGGAGAACAGCACCAGTCAGTCCATCGGCGAAACAAAGCCAAGTAGTCGTTAGTACTTACGCGttaggatttatttattcattatatagcTATTTGTATTTGATCGCTTTGGAATGAGCGGAGTCTTTCTGAAGTTGTTCCACGCGGTGGTACTTGGCGCGGTCCTCTTGGCGCCACAGCTCCGCGCTTCCCCGCTCCTGGAGCCGATCCGGTGCGCGCAGTGCACCGCAGAGCGCGTGGCTGAGTGTCCGCCAGTGGATGCTGCTTGTGCAGAGGTGCTGCGGGAGCCGGGATGTGGCTGCTGTCTGGCGTGCGCGCTTAAGCGCGGGGATCTGTGCGGCATCTACACGGCGCCGTGCGGCTCGGGGCTGCGCTGCTTGCCCACACCTGGAGAAGTGCGGCCTCTGTATGCGCTCACACGGGGGCAAGCCGTGTGCACTGAGATCGGGGAGGACGTGCAGAGCCGCACGCAGCCGGCGCCAGATCAGCCCGAGGTGGAGGGTGATGGTCGGAGCGAGGCTTCTGCGGGTCCTGAAGCCGCCTCACCGATCGTCGTGTCGGGCCACATCAAGCCCTACGACCCGTGGCTCCTCAGCGGCGCTCAGGAGAGCATGAAGTCCAAAGTGAACACCTACAGAAGGAAACTTGTTGAGCTGGGCCCCTGCCATGTGGAGTTACAGAGAGCTCTTGAGAAGATTGCTCGATCCCAACAGAAGCTGGAAGAGAAGCTGACCAAGTTCTACCTGCCTAACTGTGATAAACAAGGCCTGTACAAACCCAAACAGTGTGAATCGTCTCTGGATGGCCAGAGGGGGAAGTGCTGGTGTGTGACGTCGTGGAATGGAAAAAAGATTGTGGGATCGAGTGAACTACCCACAGATGCTGAGTGCCCTCAGGAGCttaatcactgatcacacaaccacacacacattcaggccCTAAGAAACTCTTCCACTCATGGACTATttccacacacatatacatacagaacAATATGCCACTGATTTCTTTTCtactttctatttatttattgtagccTACATGGTTTTGTTTTATACAGGTACACTGTTATAAATTAGTGAATATTAGTTCACTAAACccaccaaaagaaagaaaatcttttcattttttctcatttctgaaaGGATTctttattaatatgtttatatttacttaatacatccatgcatatttatttaaactgaatGTATTCATATAATTGTTGGGGTGAGAATATTTATACCTTATGccttattattgttattatttttgtatggtgtataaatgtatatgttcattgtgtttttatcaGTGTCAGTTGTCTTATCTTTCCAACAAACTGTTGGTAGGAAtcttaaatggaaaaaagcacTGCATGACCAAACCACATTGTCACTGCATATAGCTTTCCATGCAATTTCTGTAGTTACACGattgacatttttttgtcttatttctttTACACTATTGCACAACTATGTGAAGAAGATAAAAGCTTTCACAATTCTCTATTTTGTTCTGCAGTGCATGATGGGTATTGGTCTTCATATCTTCTGAAACGGGTAACTACCTGTTCCTACCTCTGTTTTTGAAGATttattgtgtctgtgtgatttCTGAGAGACTTTGCTTTTGCCAGTGTGGCTTTTTGTCCATGGACTTAGGACCACTTAAGTTTGTATTGGTGGATGTACAATGTTATAAtggtatatatattatatatgtgtgcctttttaataaattgtggGGGAAAATGTC

Function

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
K23578 IGFBP1; insulin-like growth factor-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 139365 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 139365 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 150515 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 152843 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 154091 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 174767 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 276529 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 381078 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 461487 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 752742 6713927 ~ 6727514 (+) True G290935
XM_034313459.1 mRNA upstream 12945 5904694 ~ 5945486 (+) True adcy1a
XM_026944389.2 mRNA upstream 12945 5905021 ~ 5945486 (+) False adcy1a
XM_026944673.2 mRNA upstream 70872 5875188 ~ 5887559 (+) False sirt5
XM_026944674.2 mRNA upstream 70872 5875369 ~ 5887559 (+) True sirt5
XM_026944354.2 mRNA upstream 90418 5863591 ~ 5868013 (+) False si:ch211-121a2.4
XM_026944687.2 mRNA downstream 107422 6068607 ~ 6075045 (+) True mcm3l
XM_026944689.2 mRNA downstream 108439 6069624 ~ 6075045 (+) False mcm3l
XM_026944682.2 mRNA downstream 129241 6090426 ~ 6127902 (+) True trappc8
XM_026944683.2 mRNA downstream 129241 6090426 ~ 6127902 (+) False trappc8
XM_026944684.2 mRNA downstream 129241 6090426 ~ 6127902 (+) False trappc8
XR_004580141.1 other upstream 156738 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 979031 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 1051557 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1628183 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1922033 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1923460 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1926343 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile