RNA id: XM_026944683.2


Basic Information

Item Value
RNA id XM_026944683.2
length 5462
RNA type mRNA
GC content 0.52
exon number 30
gene id trappc8
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6090426 ~ 6127902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGCGAGTGAGCGTTAGGATACAACATGGCTGCCGCGGTGGGTTGTCAGTAGGGGAGTTGTTTTTACTCTGAAGCAGTTGCTTTATTTCGGTTAAAGGCAGAGGACAGAGTGCGCGCTCGGGTCCCGCCATGGCTCGGTGTGCTCAGTCCGTGCAGGAGTTCATCCAGGACTCGTTCGTGCCCATGGTGGCTGTGCTGTGCAGCGACGACGCCGAGAGACTGAGCCGCAAAAACAACCTGAGTTTCCCCGAGCTGCTGCGGCCCTTCTGCCGGCTGACCTCGGAAGGTCACCTGCGCGACCCCAATAACCAGATCGTGGTGGTGAAGGGGCTGAGGATCAGTGTGACAGGAGTGAACACTCGGCCAGCGCACCCCACCGAGCTGGACAGACTCCTGAGCCAGGCCGTGTCAGCCTGTCAGCCCCCCGAAGGACCCGCTGCTAACGTCATCACTGCTGGAGACTACGACCTCAACATCAGCGACCGCTCGGTCAAAGCTAGCGTTCCCTGGTACTCTGACTGGAGAGAAACGTTCACCCAGCTCAGCTCCTCCAAATACTATACAGcaacAACACCATGGTTTGAAGCATACAGGGAGAGTTTTCTACAGTCCATGCCTGCATCGGATCACGAGTTCCTCAACCACTATGTGGCCTgtatgtTGGTGGTGTCGTCTCATGAAGCCGTGCCCACTGAGCAGTTTCAGAAGCTCTCTCAGGAGCAGCACAGGATCCAGCACAGTGGAGAGTACACTTACCCCAAATGGTTCATCCCCAACACCCTCAAATACTACGTCCTACTTCACGACGTCAGTGATGGAGACGAAAAGAGGGCAGACTCCATATATGAGGACATGAAGCAGAGGTACGGTACTCAGTGCTGTTACCTGTTGAAGATCAACTCCGGAACAGGTGCTGCTCGGCCAGATGAGCAAATGCCTGACCCCTGGAGTCAGTATCTACAGAAGAACCACATCTACAGCTCTGAGCAGTACGAAGAAGCTATGGTGAATAATGTTGGGGAGAATAACATTCAGAATAACTCTGAAGTGGATGGACTTGACACCTCAGATGCAATCACCAATACCCATCCACTGAAACTGGACCAGACAGCTGACCCAGGTTATCCCTGCAACCCCCGCGAGGCTATGAACAGTGTGGACATGGATCTATCAAGGTCACAGAAACAGACCCCAACATCATCACAGGCTCATGGTGCCTGCCTAACCCTCAATGACCATGACCGCATCCGCCAGTTCATCCAGGAGTTCACCTTCAGAGGACTGCTGCCACACATCGAGAAGAACATCCGCCAGCTCAATGACCAGttgGTGTCAAGGAAAGGGTTAAGTAGGTCTCTGTTCTCAGCTACAAAGAAGTGGTTTGGGGGTGGCAAGGTTCCAGAGAAGAGCATTGCTGAACTAAAAAATACTGCAGGACTGCTATACCCCCCAGAAGCCCCTGAGCTGCAAATTAGAAAGATGGCTGACCTGTGCTTTCTGGTTCAGCACTATGAGTTGGCCTACAACTGCTACCACACTGCCAAGAAGGACTTCCTCTCTGACCAGGCCATGCTGTATGCTGCTGGAGCACtgGAGATGGCTGCTGTATCTGCGTTTCTGCAGAGTGGAGCCCCCAGGCCGTACCCTGCCCACTACATGGAGACAGCCATCCAGACATATCGAGATGTCTGCAAaaacATGGTCCTGGCAGAGCGCTGTGCTCTGTTGAGTGCTGAAGTACTGAAGAGTCAGGCCAAATACTCAGAAGCTGCAGCTCTCCTCATCAAGATGACCAGTgagGACTCTGACCTGCGGAGTGCGCTCTTATTGGAGCAGGCAGCTCACTGCTTCATTAACATGCGCAGCCCCATGGTGAGGAAGTTTGCCTTCCACATGATCCTGTCAGGCCACCGTTTCAGCAAAGCCGGACAGAAGAGACATGCATTGCGGTGTTACTGCCAGGCCATGCAGGTGTATAAGGGGAAGGGCTGGACTCTTGCCGAGGATCACATCAACTTCACCATCGGCCGACAGTCCTTCACTCTGTGCCAGCAAGAGAACGCCATAGCCGCTTTCCGACACATTCTGATCGGCGACAGCAAGCAGTCTGCCACGCAGCAGAGCGCCTTCTTCAGGGAATACCTTTATGTGTATAGGAGTGTGAGTCAGCCGTCCAACGAGAGCTCTCTGCCTCAGCTGCCCCTGCCCTGCTTACTCTGCACCCAGACGCGCGTGTTCTTTGGCCACGAGCGCAGACTTGCGGAGGGGGAAAAGCAAGCAGCCACCCATGTGTGGCTGGATCAGGAATACGACCGGGAGCAGTCACAGCTGTGGGCGGAGTTGGAAGAGCAGGTGGTGGCTGTGGTCAACCGGGGCAGCGTGCCCGTCAGCTTCCAGCCAACTCAGTACTGCCTCAGCAGTCACACCGATAACCTGCGCTACCCCCTCGCTGTGGTGGAAGAGCCCATTATCGTGGAGGTGGTGTTCAGAAATCCTCTGAAGGTTCCACTGGCTTTGTCCGAATTGTCTCTGCTGTGGAAATTCACTCCCAAGGACTTTTCTGGGCCTCAAGGAGGCACGAGTGGAGAACCCATCTCTAATGAAAAGGAGGCAGCCACAGGCAAGGCCACAGCACTCAATGACCTTATCAGCACTGAAGTCATTCCAGAGTTCCCTATAAGTCCTGAAGAAACGAAAGTGgCTCGGCTGAAATTGCTTCCTCATAAAACAGGAGAGCTACATGTCCTCGGTGTGGTCTACAATCTGGGCACTGGAGAGGAGGACAGCAACACTGGTGAAGCCAGTCGTTTGATGTGTGTCCGCGGGAGGCAGGATCTGGAAATCCAGGGGCCGAGACTGAACACGACCAAAGAGGAGAAGACCTCTGTCCGACACGGATCAGACCGTCGCCTTGAACCTATAATCACTCCTCCAATGCCTCTGCTGGagGTGTTTTTCATTAACTTCCCCACGGGCTTGCTATGCGGCGAGATCAGAAAAGCGTGGGTGGAGTTTGTCAACGTGAGCGCCGTTCCCCTCACTGGCTTGCGGGTGGTGTCCACCCACCCGGAGTTCTTCACCTTCGGAAGTGCGACCTCTGACCTCACCCCAGTGACCCCCACTGCTGCTGAACACTGCTCCGCCTACAAGACAATGGTCATGCCCCCGTCTGTGGCTGCAGTGACGCTGGTATCTCCTGCATCGTTTGGCGTGACTGGGGATGACCGGCCCACAGTAGCTGAGATTGCTTTAACAGAAGGAGTTCTGGGACCCGGCGAGGCACTACAGATACCACTGTGGCTCAGAGGCCCTGACCGAGAGGGCGTGCACGAgatccacttcctgttttactATGAGAGTGTGGAGAAAAATGCAAAGCTCAGTCACCGAGTGCTGCGCCACACAGCCTTCATCTGCGCGAGTCGTTCGCTGAGCGCAAGAGTGACAGCGTGTCGCAGTAACACGCTGCCAGGAAAAGTCAGGAGAGAGGAAAGGGAGGAGGAGCGCTGCGGCAGCATGCTGGTGTTCGTGGATGTGGAAAACATCAACACTAGTGAAGCAGGAGTGCGCGAGTTCCACATAGTGCAGGTGTCCAGCAGCAGCAGACAGTGGAGGCTACACAAGTGCATCAATCCTGCTGGAGACAAAGACTCTAAGTTGGGCAGCAGGGAGAGGGGGAAGCTGTGCTTCAGGGCAACTAGATGCAGAACACAGGAAGCTACCTCAGACACAACAGAGAAATACACTTTTGCTGACCTAAACCTTGGCAATGAACAGATTGTCAGTTCTATGACTCCATGTGCGGACTTCTTTTTCCGGAGAGGTCCGCCCTCTGAGTCCAGGAAAGGAGGCGTGTCTCCAGGTGGAGCCACGCACATGAGGAGGCAGAGCCTCACACCTGCTGGCAGGACGGATGACAGCATAATGAGTGTCGTTCGGAAATGCAGTGAAGTGGAACTCGACATCATCGTCCTTTGGAAGGCTTATGTTGTGGAGGACAACAAGCAGCTCATTCTAGAGGGACAACTCCACGTTGCTTTGCAAACTATTGGCAAGGAGGCATGCTCACTCACACAGAAAGAGGAAGCTCAGGAGATGGTGCTGCTAAAGTTCAAGCCTGATCCTCCACCTCCTGTCAGCAGACCCTCACTGGAACAGCTTTCTCATCTCATCAAGACCTGTCTGCACTACCCCGAGTCCTATGACCACCCCTTCCCACAGaaaagCTTATGCATGGTACCGGTTACCTTGACTCTGTCCAACTGTTCCTTGGCTCAGGTGGATGTCATCATTGACCTGCGCCAGAAAACGACGAGCCCCGAGTCACTAGAGGTGCATGGTGCGTTTACATGGTTGGGGCAGACCCAGTACAAGCTGCAGCTGAGGCCACAGGAAGTCCACCAGCTATCGCTGAAGGCCTGCTTCTTCCAGGCTGGTGTGTATAACCTGGGCACGCCGCGGGTCTTTGCCAAGCTCGCCCAGTCAGGCACCATGTGTGAGACCAGCCAGCAGAGCGCCATGCCAGCTCTAATCATCATTAACAGTGTGTGATCCAGTCATCGGTGCAGGACTGCTGCTGCTCCAGCCTCAACTCACCACCCTACAGCAACAATTCTCTTTCAGACTGCAGCAGTTTTCTACTTCTTGTTTAAAAAGAATTGAAAAACTAAATTTGGGGGGGAAACAATATACCGAGGTTATGTTTAAGTGCAGTACTGCATCTGACATTCTTGTAATCTCTGGGGAGATGATAAAGACCAACATACCCATAGTTGTTTTCGTCTTAAATACAGAGAATGGAGTTGAAACGTAAAAAggttcttttttgtctttcccAAGAATATTTCTcatatcagcattttttttttttttttttttttatgaagtccattttatttacccaAATCAACACTTCAGACTAAAcctgtgcgtgtgcgtgcgtgcgtgcgtgtgtgttgctAAATAAATGGGTGTCTCCTCATATTGCCAGTGTTTCAGGCACTACGCTTCACTTCTGCAGTAACAAAGACTTTGCTCCATGTGGAATCTTGAAGCTGCATAACTAAAGATATAACCTGCTGCAGGACTTGTTTTCTCTGCCTAACGGATCATGGCATAATTTCTTATTCAATGAGCAGGCTGTACAAGCTGTCAAAGCCAGTGAGGTGCGAATGACATCTGTTTGACAGTGAGGAAGCGGTGGCATGAGTAGCCCACTGCAGTACTGTGACACGCTGTGTAATACTCTGGTGTGTATTGTTTTGCTGGACTGGGCTGATTTCACAGGAAAtatgtcattttcttttctttacaaacCAATCATTTGCTCCTCTTTCCACCTGTCACCCCTGATTAAACTGTTATTTAATGTATCTATGTGATTgcttttcagacaaaatgatgtattatatttataacaaatgactgtaaatagaataaaatgtaacCAGATAACCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 271360 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 271360 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 282510 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 284838 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 286086 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 8050 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 109812 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 214361 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 294770 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 586025 6713927 ~ 6727514 (+) True G290935
XM_026944687.2 mRNA upstream 15381 6068607 ~ 6075045 (+) True mcm3l
XM_026944689.2 mRNA upstream 15381 6069624 ~ 6075045 (+) False mcm3l
XM_026944681.2 mRNA upstream 129241 5958431 ~ 5961185 (+) True igfbp1a
XM_034313459.1 mRNA upstream 144940 5904694 ~ 5945486 (+) True adcy1a
XM_026944686.2 mRNA downstream 8018 6135920 ~ 6156764 (+) True b4galt6
XM_026944489.2 mRNA downstream 86839 6214741 ~ 6230552 (+) True dsc2l
XM_026944591.2 mRNA downstream 333826 6461728 ~ 6504131 (+) True cdh2
XM_026944583.2 mRNA downstream 495025 6622927 ~ 6629974 (+) True aqp4
XM_026944352.2 mRNA downstream 513065 6640967 ~ 6660584 (+) False kctd1
XR_004580141.1 other upstream 288733 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1111026 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 884840 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1461466 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1755316 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1756743 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1759626 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile