RNA id: XM_026944687.2


Basic Information

Item Value
RNA id XM_026944687.2
length 2616
RNA type mRNA
GC content 0.47
exon number 19
gene id mcm3l
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6068607 ~ 6075045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAAAAGCATGCTGAGTAGAGAGGTGCCAAATCGTTTGTTGTGTGAGCTGTATTTCGGTATAGTATTGAGGGAAAATGGATGGTGGCTTTGAAGATCTTGAGCTACGAGAGGCACAGAGGGAATACCTGGACTTTTTGGATGATGATCAAGACCAGGGTGTGTACCATGAGAAAGTCAGAAGTATGGTGTCTGAGGGACAGTCTCgggtaatcatcaacattaatGACCTGCGGCGAAGGAATGAAAAGCGAGCCAAAGAACTTCTGAAGAATGCCTTTGGTGAGCTGGTTGCATTCCAGAGAGCTCTGAAGGACTTGGTGGCCTCCATTGATGCAACGTATGCCAAACAGTTTGATGAGTTTCATGTTGGTTTTGAGGGCAGCTTTGGGAACAAACATGTCTCCCCTCGCACTCTTAGTGCCCGGTTTCTGGGAAATCTTGTTTGTGTGGAGGGCATTGTTACCAAGTGTTCACTGGTCAGGCCAAAGATCATGCGCAGTGTTCATTACTGTCCTGCCACTAAGAAAACCTTGGAAAGGAAATATACTGATCTGACTTCACTGGATGCATTCCCTTCAAGTGCCATCTACCCCACCAAGgatgATGAGAATAATCCATTGGAAACAGAGTTTGGGTTGTGCTGCTATAAGGATCACCAGACTCTGACCATCCAGGAGATGCCAGAGAAAGCTCCTGCTGGGCAACTTCCCCGCTCAGTTGACATAATTTCTGATGATGATCTTGTGGACAAAGTTAAGCCAGGCGATCGTGTACAGATAGTTGGTGTGTACCGGTGTTTACCTGCTAAACAAGGAGGATTTACCTCAGGAACCTTCAGAACTATACTGTTAGCCAACAATGTCAAGCTGATGAGCAAAGAAATTGTTCCCACGTTTTCTGCTGATGATGTTGCCAAGATCAAAAAATTCTGCAAAACTCACTCTAAGgatgtCTTTGAGTACCTAAGTCGATCGCTAGCTCCCAGCATCCATGGCCATGAATATATAAAGAAAGCCATCCTCTGTCTGCTGCTGGGAGGAAATGAGACCAACCTAGAGAACGGCACTCGAATCAGAGGCGACATCAACATCCTGCTTATAGgtgaCCCATCAGTTGCTAAATCTCAGTTGCTGAGGTATGTCTTGTTCACAGCACCAAGAGCCATTCCTACCACCGGACGAGGCTCGTCTGGGGTGGGTCTAACTGCTGCGGTTACCACTGATCAAGAGACAGGTGAGCGCCGGTTAGAGGCAGGTGCCATGGTCCTTGCTGACAGAGGGGTTGTGTGTATTGATGAGTTTGACAAGATGTCTGACATGGATCGCACAGCCATCCATGAGGTGATGGAACAGGGGAGAGTCACCATAGCTAAAGCTGGGATCCAGGCCAGGCTGAATGCTCGCTGTAGTGTGTTGGCTGCTGCTAACCCAGTGTATGGAAGGTATGACCAGTATAAAACCCCTATGGAGAACATTGGACTGCAAGATTCCCTACTCTCTCGATTTGATTTGCTCTTCATCGTTCTGGATCAGATGGATTCAGAGAGTGATCGAGAGATTTCGGAGCATGTGTTGCGCATGCACAGATACAGACCCCCGGGGGAGCAGGAAGGAGCAGCGATGCCATTGGGAAGCACAGTGGACGTGTTTGCCACAGAGGACCCAAACATCACAGAGGCCACTGAGCAGGAGCTGCAGATCTATGAAAAAAAGGACAACGTCCTCCATGGCCACAGGAagaaaaaGGAAAAGATTGTCACCATGGAGTTTATCAGAAAATATATCCATGTGGCTAAGCTAGTGAAACCGGTTCTGACTCAGGAGGCTTCGGACTACATAGCCGAGGAATACACCAAACTGAGAAGCCACGACCAAGTCAATAACGACTTGGCAAGGACAATGCCCGTCACAGCACGTGCCCTAGAGACTATGATCAGGTTGGCTACAGCCCATGCTAAAGCCCGCATGAGTAAAACGATTGAGTTGGGAGATGCAGAGGCTGCTCTGGAGCTCATGCAATTTGCCTACTTCAAAAAGATTCTGGAGAAGAATAAGAAGAGGAAGCTTCCTGAAGATGGTGTGGACACAGAGATGGATACGACTCAGAGCCAGGAGACCCAAAGTCAGAGAAGTGTCAGGAAACGTTCTCGTGTATCTAAAGATGACATGGATTCAGCAATGGCAGAAGACTCTGATGACCCATACAACTTTACAGAAGATGAAAACACCCAACCCAGCCAACCAACCAGGCCAGTGTCTCAGAGGAGTAGCCAAAGGAAGAAGACTGACATCAGTCAAGACAGAATGAAGGTTTTCAAGGCAGCCCTCCTGAAAGCATTTAAAGTGACCAGGTCTCAGTCTGTGCCAATTCCTGAGCTTCTCACTCACGTTAACAAAGGCCAGTCTGAAGAATTTGACCAGCAGGAGGTGCAATTACTTTTGGAGCGCATGCAGGATGATAACCAGGTCATGGTGTCTGAGGACGTGGTCTTCCTCATCTGATAAAACAACGGTCTCTAGATGTGATCATGGAATTGTGATATTGTTGTATATCCTTATGTATTATTGTCTGTAGTGTTCATTgttagtaattaataaatagtttGAGCACTTA

Function

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02541 MCM3; DNA replication licensing factor MCM3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 249541 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 249541 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 260691 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 263019 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 264267 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 60907 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 162669 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 267218 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 347627 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 638882 6713927 ~ 6727514 (+) True G290935
XM_026944681.2 mRNA upstream 107422 5958431 ~ 5961185 (+) True igfbp1a
XM_034313459.1 mRNA upstream 123121 5904694 ~ 5945486 (+) True adcy1a
XM_026944389.2 mRNA upstream 123121 5905021 ~ 5945486 (+) False adcy1a
XM_026944673.2 mRNA upstream 181048 5875188 ~ 5887559 (+) False sirt5
XM_026944674.2 mRNA upstream 181048 5875369 ~ 5887559 (+) True sirt5
XM_026944682.2 mRNA downstream 15381 6090426 ~ 6127902 (+) True trappc8
XM_026944683.2 mRNA downstream 15381 6090426 ~ 6127902 (+) False trappc8
XM_026944684.2 mRNA downstream 15381 6090426 ~ 6127902 (+) False trappc8
XM_026944685.2 mRNA downstream 15381 6090426 ~ 6127902 (+) False trappc8
XM_026944686.2 mRNA downstream 60875 6135920 ~ 6156764 (+) True b4galt6
XR_004580141.1 other upstream 266914 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1089207 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 937697 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1514323 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1808173 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1809600 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1812483 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile