RNA id: XM_026944691.2


Basic Information

Item Value
RNA id XM_026944691.2
length 3371
RNA type mRNA
GC content 0.41
exon number 9
gene id tdh
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7012742 ~ 7019686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATCTAcagacacatatatatataacctcCTCTCAGGAGCTGATGCAACCGTGAAGCCCTGTTAAAGAGCAGCGTGGGGAAGCATCTTACACTGCCAGCAATCCAGACACACATTATCATTCAAACTAGCTTATTGGTAACTGAAGATGCCAGTGGTCCGTGCCTTGACTAAGGTGGCTAAGAAAGCCCTTCTGGCCCCTGGTTGTGGCTGTCAGGTTTCAGCAGTGGCTGTGCGCCATGTCAGCTTCTCCCCCCGACAAGTGAGCAATGCATCAGATGCCAGCTTTCACTCTGTGTCCTTTTCTGAAACAGATCATCCAAAGGTCCTTATCACAGGTGGCCTTGGGCAACTAGGTGTTGGGCTTGCCAAATTGTTGAGGAAGAGGTATGGAAAGAACAATGTGATCCTTTCAGATATCAGGAAACCTCCCACCCATGTCTTTCACAGTGGCCCCTTTATCTACTCTGACATTTTGGACTATAAGAACTtgcgagagattgttgtcaacAACCGGATCACCTGGTTGGTGCATTACAGTGCTCTTCTCAGCGCTGTTGGGGAAGCTAACGTGGCCCTGGCCCGGGCTGTCAACATAACTGGTCTTCACAACATCCTGGACATTGCTGCAGAGCATGGGCTTCGATTGTTTGTTCCCAGCACGATTGGTGCCTTCGGCCCAACTTCTCCCCGTAACCCGACTCCTGATCTTTGTGTGCAACGACCTCGTACCATTTATGGTGTCTCCAAGGTCCATGCTGAGCTAATGGGCGAGTACTACCATCACCGGTATGGTCTTGACTTCCGCTGTCTCCGGTACCCTGGTATCATCTCTGCAGATTCCCAGCCTGGTGGTGGTACGACAGATTATGCTGTGCAGATATTCCATGATGCTGTCAAAACTGGCAAGTTTGAGTGCAATTTGAAGCCAGACACGCGACTTCCTATGATGTACATTGACGACTGTTTGCGGGCTACGCTCGAGATCATGGAAGCCCCAGCTGAGACGCTGTCCATGCGCACTTACAACATCAACGCCATGAGCTTCACTCCTGATGAACTGGTGCAGGAGGTCCAGAAACAGCTGCCTGACCTGCAAGTCACATACAAAATTGACCCTGTACGGCAGGCAATAGCTGACAGTTGGCCCATGAACTTTGATGACTCTAATGCGCGCAATGACTGGAGCTGGAAGCATGACTACGACCTGCCGGAGTTGGTTCAGACGATGCTCAACTTCATTGGTTCAGAGTCCCAATTTGCCCAAGCCAACTGAATCAAGTCTAAGAAATAGGAGCTTGTATATACATATTCTAAAGACTGACAGCCATGGAGAACAGAGATCCCTGGTCTGTAAATAATtacttgctctctgtctcttctgtgCCTGGATTATATGGAGGAAAACATATACAGAGATGTACATAAGAGATATATCGCTCATATTAATGGCGACTGTCAATTCTTGAGTGCCCAGAACATGTACTTCCCCccaaatatctttttatttacattttattattttgaagtgATGTaatagtaaaaatgaaaaaaattagacATTGATTAGCTTTGGGCTCTAATATCACGGAAGCTAAGAAGCTCGATTTCCTTTAATTAGTAAAGGAAATATTAAAGCCAATGGCGGATGTTCAGTGGTGGGGCTAAGGGCTGGCTTAGAGTGTAAATTGCTACCCAAGGTTACCCCAGTTATAGAGCAAAAAGTTGTTGCACTGCTTAAACGATTTACCTCGATTTAATGACAAAAACCTGCTATTAGGAAAGTTACCAATCATTAACAACAGTTTGGTGGGTCTGAAGACAACAGTGTGTTAGGCTACTTTTAACTGAGAAATGTCTACTATGAGTTAAATAAGAAAGCAGGAAACTTTAACTTATGACCAACCGAACAAATAATGTCCTGCAAGCTAATCGTTAACCATGcagtaaaaaatacaaatggatAAATCAACACAAGACATTGTCAGATGTCGCAAATTTTTATAGCGAACAACACCAAAATCGCTAGCTAGGCAAAATCTAGCTAAGTGTATTTTATTAGATAACATTATTAGCAAATAGAGGGTGCTTTAAACTTTTTAATGGAAACATTATCATATTAATAACACTGCCCTTTCTGATAAGTAATGGATTTATGGACTACATCAGTAATATCAACTTGTTGTAATATCAACATGTTAATCTGCTTCGtgaaatgaaaagcaaacaAGTGTTAGCAATGATGAATACTAGAAAATGTTAGCTTAACTATCTGATAACAGATTACCACCAAAAGAAGTtacttacttaaaaaaatacaaataagttaattactgtatattgtttaattaattttcaatagGTTTCCCATCACAATAAAATCGCTATGTCTAGCCTGTTCAGTGCACATGTAAAAGTTATGGCTACATGCCTAAGAATATAAATGtactgcatttgcatttggcagatgcccttatccagagcgacatACAGAAATGAAAGGACATTACACTTATCtctttttatacaactgagcagttgagggttaagggccttgctcaagggccctgCAGAGGCAgattggcagtgctggggtttgaacgcACACTCTTACCATCAATAGTCCCAAgacttaaccactgagctaccgttagaatgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtatgcatgtatgcatgcTCATGCATgcgtgtatacgtgtgtgtatgtatgtaaaatggAAGCAGGGGCCAGCATAAGTAATAgtagaattttcttttttttcctttcctccaCCTCTTGTGcactatttatctatttatttagcttttcttTCCTTACAAGCAAaatagcttctttttttttttatctcttgctCCAATAGCTActtaatgtgtttgtattttttttttaaatgatatggACACTGTTTTCCATATAAACACTTATCTTTTATGTTTTCTATATGAGCTTGCCATGTCAATCATacctttttgtatttaaaatgttaggGCAGCCTCTTTACTTAGCAACACATTTGGTGATCATAAAATGTCTGTGATCAAATCATTTTTCCTCAGTTATGCTGGAATGAGTTGGTTATGTCTTGACTCGTCATATTTGCAAATTTCAGCAACTGCTTTGAATTTCTTGATGAGTGACAGTCTCCTGAGTTGCTGCTAGATTATTTTTCAAGAGATATTTCAAGAACAATAAAGCTTCAGTTCGAAATCTCAATACTACTGATGAGAAACGGGTGCTAGAGCTTTGGTGTTAACGTTCACAAACCATACACTGATtgcaacaacagcaataataaagacattttatgaCTCAA

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008743 L-threonine 3-dehydrogenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344857 lncRNA upstream 29938 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 73123 6939191 ~ 6939619 (+) True G291058
XR_004580109.1 lncRNA upstream 78882 6930369 ~ 6933860 (+) False LOC117599731
TU344873 lncRNA downstream 38697 7058383 ~ 7058583 (+) True G291109
TU345070 lncRNA downstream 200620 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 241364 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 384742 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 469622 7489308 ~ 7520858 (+) True G291423
XM_026944554.2 mRNA upstream 9112 6987109 ~ 7003630 (+) True mtmr9
XM_034313789.1 mRNA upstream 9112 6987123 ~ 7003630 (+) False mtmr9
XM_026944555.2 mRNA upstream 9112 6989002 ~ 7003630 (+) False mtmr9
XM_034313790.1 mRNA upstream 9112 6989034 ~ 7003630 (+) False mtmr9
XM_026944596.2 mRNA upstream 101554 6905521 ~ 6911188 (+) False fam167ab
XM_026944650.2 mRNA downstream 4321 7024007 ~ 7049333 (+) True pinx1
XM_026944323.2 mRNA downstream 34272 7053958 ~ 7057627 (+) True sox7
XM_026944570.2 mRNA downstream 76455 7096141 ~ 7106016 (+) True blk
XM_026944569.2 mRNA downstream 76455 7096141 ~ 7106016 (+) False blk
XM_026944600.2 mRNA downstream 99005 7118691 ~ 7147134 (+) True fndc4a
XR_004580141.1 other upstream 1211049 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 2033342 4941951 ~ 4979400 (+) False dnm3a
trnac-gca_25 other downstream 569682 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 863532 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 864959 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 867842 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 868323 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile