RNA id: XM_026944692.2


Basic Information

Item Value
RNA id XM_026944692.2
length 1751
RNA type mRNA
GC content 0.48
exon number 9
gene id echdc2
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4425634 ~ 4432355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGTCTCCATGGTGATGTGAGGAAGTGTACACAAACGGAAAGTAGATTAAGTAACAAACTCCTTCCTACACGGACTTTAACACTGCTTTGGAAGCTCGGGATGTGATTTGTAGCTACATTTCCGAAAAACAGACTTCAGTTACAGAAGGTTAAGACGACAGACTACCAGACAGGACATGAGCGTGTTTGGGAAGTTAGCTGGAGGAGTTCATGCGGTCGGCAGAAGTCATGCTGAACTACTGCACAGGCTGCTTTCTGCTCCTCAGCGCTCACTGCCCGGCTACATGACTGCATCTGACAGGAAGAAGTGCTTTAGTCGGGGGTTTAGCGCTGTGCCGAACCGAGACGCTGCTGAAGTGGACCTCAGTCGTCTGGAAGGTGAAGACCATGGCATTGTGGAGGTTCTGATGCGTCGGGAACGGGCGCGGAACTCTCTGGGTCGTGTGTTTGTGGCTCAGATGCGAGAGCTGGTGTCAGGGCTGCACCATGACGCAGCCGTGCGTGTGGTGATCTTTAGGAGTCTGGTGCCTGGAGTCTTTTGTGCAGGGGCTGATCTGAAGGAGAGAGCCCAGATGAGCAACTCTGAAGCTGAGCATTTTGTTCATGGACTCCGTTCACTAATGAATGAAATAGCGGCGTTGCCCATGCCAACCATCGCTGCAGTGGACGGCTTCGCTCTAGGGGGTGGGCTGGAGCTGGCGCTGGCGTGTGACCTCCGGACAGCGGCATACACTGCTCAGATGGGCCTGATTGAAACCACGCGGGGACTCCTTCCAGGGGCGGGGGGCAGTCAGCGTTTGCCACGGGCAGTGGGATTTGCTGTGGCCAAGGAGCTGATCTTTACTGGGCGGCGTGTGGGGGGGGAACAGGCTCTACACCTGGGAATAGTGAACCGTGCCGTCCCACAAAACCAGAGCGGAGATGCAGCTCATAGAGAGGCTCTCAACCTGGCCCAGGAAATCCTCCCTCAGGCTCCGTTCGCAGTGCGCATGGCCAAGGAAGCCATGAGCCGAGGAATAGAGGTGGACATCGCTTCAGGAATGGCCATCGAGGGGATGTGCTACGCCCGGGTTATTCCAACAAAAGACAGGCAAGAGGGAATGGCAGCTTTTATAGAGAAAAGGCAGCCCAGATACACTGGAGAATAAACAGACCCAGATCACACACAGGCTCTTTAAAGAGCTGTTTTGTGATTCCAGTCTTACTGGATCATTAGACTACTTCCTAATATCAAAACAAACAGTACATATTGGCCACATACTGGTTaggtaagtaaggaataaaacacttggggggtgtgctgttctaggaaaacaatcaacaacacaGTGGTGTGATGGCATTACCAACACAAAGTCATTTTCcagtaaacctgtgatttgccttgtagctgaactactgtcagagctgtgctaggacagtatagaaaattaatcaacaccttttgaccaatcagaatcaagaattcagcagcatcatgctaataataaacattatatagtatatgttGAGAATCTTTACTTCAACCATGATGATCACATTCAGATATTAATTACAGCACTGCCTGATTAACaatattatgtattttgtggaaaaaaaaaaaaaaaaaagctttggtATCAATTACAGTTTGGTATGGTCCTCCATAACAACCATAATACAGTTGATTTACAGATGCATTTTTAGCCTCTGTATTCATACTGTTTACGGTAACACTGTAATTctgattaataaacatttattaccAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342943 lncRNA upstream 62546 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA upstream 72833 4350748 ~ 4352801 (+) True LOC117599675
TU343090 lncRNA upstream 87335 4328848 ~ 4338299 (+) True trnad-guc_17
TU343078 lncRNA upstream 90675 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA upstream 95362 4319461 ~ 4330272 (+) True G289619
TU343335 lncRNA downstream 880 4433235 ~ 4434790 (+) True G289831
TU343392 lncRNA downstream 97573 4529928 ~ 4539840 (+) True G289866
TU343408 lncRNA downstream 175013 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 191787 4624142 ~ 4627837 (+) True LOC117599674
XR_004580147.1 lncRNA downstream 272307 4704662 ~ 4798444 (+) False LOC113545162
XM_034313494.1 mRNA upstream 5801 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA upstream 5801 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA upstream 5801 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA upstream 5801 4408765 ~ 4419833 (+) True LOC113545214
XM_026944622.2 mRNA upstream 29514 4366765 ~ 4396120 (+) True LOC113545323
XM_026944565.2 mRNA downstream 15292 4447647 ~ 4450922 (+) True LOC113545289
XM_026944414.2 mRNA downstream 20961 4453316 ~ 4557487 (+) True ralgps2
XM_026944629.2 mRNA downstream 128806 4561161 ~ 4581781 (+) True fam20b
XM_026944392.2 mRNA downstream 168700 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA downstream 168700 4601055 ~ 4609601 (+) False LOC113545190
trnad-guc_22 other upstream 75755 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 87660 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 92005 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 96731 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 98092 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 509596 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 509596 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 509596 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 509597 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1303118 5735473 ~ 5801693 (+) True usp24

Expression Profile