RNA id: XR_004580079.1


Basic Information

Item Value
RNA id XR_004580079.1
length 3629
RNA type misc_RNA
GC content 0.41
exon number 13
gene id LOC113546780
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2133158 ~ 2142181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggcaccaggatgcactatgggaagaaggcaagctggcagtgtgatgctctggacaatgttctgctgggaagccttgattttaatgttacggctgaaCGGTGTACATATTTGAATCTCTATCTGTATTCGAATGGTCTAGACTGGAGGAATGTTTTTGCTTGCTGCAGGATAAGTGCAGATGGGATCTAGATCTAATCTGCCCTTCCTGCCAAGGAATAGTGCGCTTCCTGTtcctatctgtatttgtttagaacacattggGCTTTCatttatcatgctggatatgaatgaatttattggtAAATTGTTCATAGGAGCATTTACATATGAGAATTTGCTGTTCATGAAAAATCCCTTAAGTTTGGAAAAAAGGTTCATATCCTACAAGAGCTTCTGAGAGTGTGTCAATTCAAGCATAGGAAGACTAAGTAATGAAAACCTCCACTGATCAGCTTCAAACCATATTAATGCATGGATTAGtgcaattttatttacagatgATTTGAGCAAGTTTAAATGgcctttttaacattttaactgcACACAAATGTGAAATGACAATTTTGGGAACCcagttttgtttcatattaatgccattaattACAGAAGAAATAAACATGAGAAGAATAATTAAAGAAAGCCAGCCAGgacaaatccataaatgaagGTAAGACTAATCATTCAGTTAAGGCAAAGGAAATGCCACTGTACAAAAGGAGGAAGGGCCGGCCTGTGCATATGGTCGCTGTAAACCGCAGAGCTGATCTGGTATCAGACTACTGGAAGATTTATTGCACGTCTTGCTTATGAGGGAATGGATATTTAGAAACCGTTATTGTATTCTATGGAAGACAAAAGCTGGCGTATATCTCAGTTCCGCATTGGTGCGTGAGAGGCTGGAGAGACTTCTGGCTGACAGCTGCTGAGATATTTAAATCAGGGAAGCAAAGAAGTTTCcttgtgtgatgtgcttggtgtccaCGATCACCTAGAGACCCCAAAAAATATGTCACTGACAATAGATGAAAAGTTTGACATTGCACTCACCAACCAAAACAGTGCGAAGtacaacaaatataaaaccACACTTGAGAATTTGattgATAGTAGTTACCGAAACATGGCTGGCTACAAACCTGGCTCTGTGAGAATTCTCAGGTTCAGgCCTGGCAGCATAAATGTAGACTTTACAATTACCACAACCACGAATGAACTTGATTTTAGATCAGCAAACTCAGAGCTCTCTCAAGTACTTACTGCAAATGGATTTAAAgttgctgaaaatgcttttgctTATAGtgTGGAGTATGACCTAGTCCAAAGCACAGGAAAAATATATCCTCTGCAGGATGTGCAGTTAAATTGTACTCTTCCAACTGGAGTAATGGGAAACATTCAATGGCGAGTGGATGGAGTTGATCCTTTTctaaattctgtaaaatataaCATCCTTAATAACAACCGCACTCTTAAAGTAATAAGTGTGAGTGCAGTTGACAGTGGTGTATATGAATGCATAACCGAAAACAATTCACTGAGATTTATCCAGTGGCAAAGAATTGTGATTCAGCCATATCCCAGTATCCAAGTAGATCCTGataaagtgtttaaatgtgatGATTTGTCCATACCGCTACAGTGCTGTGCCTACAGCAGCTATACAATTGAGTGGACCAAGGACTCCCTGTCTCCACTGACACCTCCAGGTCCAGGGTCCGGCTGCATCACGTACAACTTTGCTGTCCAGAAACAGGATTGTGAGGCTGGtgaaaaacaagtcattttcaCATGTCGACTTTCAGAGAACAGCCTGAGTGTGTTAAGTTATAGCTCAAAGAACATATCAATCACTATAACCAAAAAAGCATTCTACTGCTCTGATAGCAGCTTCGGCGTTGGGACTGTAAACCAGACAGCGTTCAGACAATGTGAGGGAGATGAGACTGGCATTAAGTGGGCAGTGTGTAATAAAACAGGCCAGTGGAGCATAATATCTAACAACTGCACCCTTCGTGTCATCCAGAACCTGGCAGATAAAGCTGAATATTTAGACGTAGAAGAAGTGCCACTGTTTGCTGCTAATCTCAGTAACACTGCAGAAGAGAATTCTGAGAATATAACCACAGTTCCTGTCAATCTCTTGAAAGTTGTTGATTTACTCAGCAGACTTGCTAATATttcaaaaacacaatcatttaCAGTGGACAAAAACACGATGgagGATTTCCTCAAAACTGTGGCTGTCATTACATCAGAGAAAGCCCAGGAAACATGGAAGAGTTTCAACGATGACAATACAAACCAGAATGCTAGCACTGTGCTTCTTCAGTCAATCCAAAGTATTGGAAGCAGTCTCTCAAATGAGAATTTTTCCATATCAACATCAAATATCCAGCTCATAAGGAATTTGAATACCTTAATCCATGAAATGTTTAGCCCAAATTCTACTACTCAGATAGGCTTTCCAGACACTAGCAGATCATTCCCAGTCACCGTCATTATTTTCTCTGAGCTTAACAGTGTGTTACCTGTTCGAAGTGCAACCTACAGTGACGGCAGTGAAACTCACACCAGCATCAATGGAGACGTAGCTGTGATTGAAGGAGAGTCGAGAGTGAACAATGTCTCCCTTTTTTTTGATGTTAAAAATAAGTCATTAGGAAACCCACAGTGTGTCTTTTGGAACTTTAACCTTTTAAATGGAACTGGTGCATGGGACTCTGCTGGGTGTGAACTAAAGCCACTAAGTAATCAAACTAAAAGGTTAACATGCGAGTGCAACCACACAACCTCTTTTTCTATCCTGATGTCACCAGTTATCCCGGATAATGAAACCTTGGCCTATATAACGTACATTGGTGTATGTATTTCAATGGGCAGCTTGGTTTTGTGCCTTATCTTTGAAAGCCTTATCTGGAAATCAATGTCAAAAACTGATACATCTTACATGCGCCACGTCTCCATCGTCAACATCGCTCTGTCCCTGCTGGTTGCGGACATATGCTTCATTATTGGAGCAGCAATTGGGAAAAAAGGGCAGAAGACACCAGTGGGTCCCTGCAGTACAGTGACATTCTTCATCCACTTCTTTTACCTCGCTCTCTTCTTCTGGATGCTGCTGTCTGCGCTCTTGCTTCTCTACCGCACGGTCGTAGTGTTCTCCAGGATGTCCAGGACCGTGATGATGACCATAGCCTTTACTGTAGGCTATGGAGCCCCATTAATAATTGCCATTGTTACTATTGCAGCAACATCTGGAAATGGAGGATACATTCAAGAAGACAATACTTGTTGGCTCAACTGGTATAAAACTAAGGCTATACTGGCGTTCGTGATTCCAGCCCTGGCCATTGTGGCTATAAATCTCCTGGTGCTTATAATAATTGTATGTAAGATACTGAGGAGTGGAACTGGTGCCACCATTCAACGAGATGAGAAACATGCCATAGTAATGATTGCCAGGGCTTCTTTATTTTAGTTCTTGGAACTCTGATGGACAATAAGattTTTGGGGTGCTGCTAGGAAGGTGGAAGCAGAAGAACATTAGCTCTAACCGTACTGGGAGCATCATTGAAGGCTCATCACCTTCTAAAGTAAGGGGTTTCTACCACATATTCCCAAGGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341394 lncRNA upstream 59277 2027343 ~ 2073881 (+) False G288225
TU341415 lncRNA upstream 61882 2071034 ~ 2071276 (+) True G288242
TU341398 lncRNA upstream 104452 2026869 ~ 2028706 (+) True G288225
TU341372 lncRNA upstream 137479 1995460 ~ 1995679 (+) True G288207
TU341357 lncRNA upstream 198375 1934577 ~ 1934783 (+) True G288192
XR_004580150.1 lncRNA downstream 5578 2147215 ~ 2151238 (+) True LOC117599781
TU341667 lncRNA downstream 73940 2215577 ~ 2218638 (+) True G288461
TU341720 lncRNA downstream 184021 2325658 ~ 2326289 (+) True G288512
TU341802 lncRNA downstream 306785 2448422 ~ 2453374 (+) True G288581
TU341932 lncRNA downstream 364932 2506569 ~ 2515375 (+) True G288694
XM_034313448.1 mRNA upstream 1887 2122561 ~ 2131271 (+) True LOC117599673
XM_034313449.1 mRNA upstream 1887 2124988 ~ 2131271 (+) False LOC117599673
XM_026946948.2 mRNA upstream 13241 2092475 ~ 2119917 (+) True tnfrsf21
XM_026946831.2 mRNA upstream 111895 1996120 ~ 2021263 (+) True ptchd4
XM_034313894.1 mRNA upstream 217298 1912614 ~ 1915860 (+) True si:dkey-1j5.4
XM_034313859.1 mRNA downstream 9597 2151234 ~ 2158694 (+) True adgrf3b
XM_026946939.2 mRNA downstream 20794 2162431 ~ 2181156 (+) True pla2g7
XM_026946983.2 mRNA downstream 48122 2189759 ~ 2212201 (+) True tdrd6
XM_026946863.2 mRNA downstream 194433 2336070 ~ 2354598 (+) False fzd3a
XM_026946862.2 mRNA downstream 194434 2336071 ~ 2354598 (+) True fzd3a
TU341376 other upstream 124352 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 773796 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 868526 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 889486 1243057 ~ 1243672 (+) True G287892
TU340615 other upstream 1241150 812277 ~ 892008 (+) True G287628
TU341918 other downstream 348040 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1223641 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1226011 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1801858 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1846415 3988052 ~ 3988123 (+) True trnad-guc_14

Expression Profile