RNA id: XM_034313621.1


Basic Information

Item Value
RNA id XM_034313621.1
length 2190
RNA type mRNA
GC content 0.42
exon number 4
gene id grcc10
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2951771 ~ 2955866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATAGGTATATTTGTAGAGATAACCCAGAATGGCATCAGCTCCAGCCCAGCAGCCCACACTGACAAtagagcaagccagagTGGTGCTGAGTGAGGTGATCCAGGCCTTCTCTGTGCCTGAGAATGCCTCTCGGATGGAGGAGGCGAGGGAAAGTGCCTGTAATGACATGGGTAAGATGCTCCAGCTGGTTCTGCCTGTGGCTACACAAATCCAGCAGGAGGTGATCAAGGCCTACGGCTTCAATAACGAAGGAGAGGGTGTGCTGAAATTTGCCAGACTGGTGAAGATGTACGAATCTCAGGACCCAGAGATCGCTGCCATGTCGCTCAAGCTTAAGTCTCTTCTCCTGCCACCTCTGTCGACTCCGCCCATCGGTGGTGGAATTCCAGCATCATAACTTCAGCCAAACCAATATCCACATCACAGGGGTTCAAAACATCTACATCAGACGTGTCCGATCTTATACACAgagggccggtgtgggtgcaggggTTCATTCCagtcaagcaggagccacatctGATTCCCCTTTTTTGATCAGTGGATCTTGGCTTTCAGTCGACTCAGGTGTAGCTTCTGCTTGgatggaatgaaaacctgcacccacaccggccctttcctTATAAGATTGGACACCACTGATCTACAGCCTCACCGTTACTGTCCTTCATCAGAAATACTGACATATTTTCCAGACTAtaagacaataaaacacaccTCCATGGATTCATAATCAGTGTATTCGCAGCTGTCAGTCACTACTTTGTGGCTAGTGTTTTGATTAGTAGGAGAAGTACAGCGTAGCCTGGCAGCGGCTGACATTTAAGGCACGTTTTCACCGCAGGGAATTTCAGCATGTTTATATCAAAAGAACAaacatcaggggaaaaaaagttgtttCACAGTCTGCGCACTTttcccatttacatttacatttatggcatttggcggACGCCCTTATCACAGCGACTTACaattctcatttatacaactgagcagttgagggttaagggtcttgctcaagggtccagcAGTGGCAGCCCACGTTCTCTTCCGTTCCACTCGTAGTTGTTGCAGTGAAAATTCCAGAATGACGATGCAAATGCAACTTCAACTTCGCTTCATTTCGAGTCGCAATGCCTGCTATAAAgagcacaaataaataaatcacgcAAATTATAGTCTGGAAAATCCACTGTTCAAATCCTGAACTTCTCACATTCCCATGGCATTCTAACTTTTGTATTACCATTTCATATTCTCTCTCGTATTTATCTGAATTTCTCTGTGTATATAGTacaaagacttttgcacaaacCTGGAAATCTGTGGGAAATAACAAATCTGAAGAtctgtgtgaaagctgtttCTGGTTAAGACTAAAGCGATATCTCACTCTGATGTAGGTTTAAATCCTACAGCTGCTGTGGAAATTCCAGCAGTGCAAAGATCTCGAGAAACGGTTATGCCAGGAATAAAATATATGGTAtgtataaacatatttgttttagtttttgcaTGTTCCTAGCAAATAATAGAAAACTCTCTCACCCAAATTGTTTGCATAAATAGTTTCCTCAATCCACATCCAGGTCTTCAGTGATATCAATCAAAATCTAGGACATAGCGTGTGTTACTGTAATGTATAAACATGAAATATATCTTCACCGTCAAGCTGTATGGCTGTAACATTATAggggcagccatcttggaacCCTGGAGGCTTAAAAAGATTTTGTTTGTGATGGACTTGAGATATTTGTTAGCAGCATTAGGCTCAAAGCTCAAggtcagaagaagaagaaattgaCCATATGAGGAACATATGAAACCGTATGTTGTCATTTTGACCAAATTGTTGCTTTTAAATAGCTTAATATGTGCATGAGATCTAAATTAGAGCAGATCCAGGGTAAGGAGAATGTGCTTCACAGTCTTCATACAGCAAAATGTCTGCCAAAGTTGGTGGCTGAGTTTCGTTTCGTCGTGCATAAGACCGCTGTTCAGTAACATCTACCAACCTTCAAACTCAACAGGAGTTCAGCAAAACACTAGTATTCatactttccctttttttcccctcattgctttttatctttttttttttttttttttttttttacctttgtttacatttgtgtgtaaattttcaTTGTGCAATAAAAACTTTAATCAGGATCAACACTC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342114 lncRNA upstream 35360 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA upstream 81504 2870362 ~ 2870666 (+) True G288836
TU342050 lncRNA upstream 187115 2764270 ~ 2765055 (+) True G288789
TU341993 lncRNA upstream 323852 2627758 ~ 2628318 (+) True G288740
TU341983 lncRNA upstream 343797 2581309 ~ 2608373 (+) True G288734
TU342119 lncRNA downstream 22467 2978333 ~ 2980205 (+) True G288839
TU342216 lncRNA downstream 236241 3192107 ~ 3193930 (+) True G288927
TU342467 lncRNA downstream 323540 3279406 ~ 3288541 (+) True G289121
TU342480 lncRNA downstream 385535 3341401 ~ 3343744 (+) True G289134
XR_003404747.2 lncRNA downstream 408362 3364228 ~ 3368671 (+) False LOC113546783
XM_034313619.1 mRNA upstream 2593 2931354 ~ 2949577 (+) False niban1a
XM_026946823.2 mRNA upstream 2597 2931354 ~ 2949573 (+) True niban1a
XM_026946918.2 mRNA upstream 25940 2902093 ~ 2926230 (+) True kifap3a
XM_026946944.2 mRNA upstream 205106 2726388 ~ 2747064 (+) True slc25a24
XM_026946936.2 mRNA upstream 249700 2684373 ~ 2702470 (+) False si:ch211-63o20.7
XM_026946914.2 mRNA downstream 11335 2967201 ~ 2976245 (+) False cbr4
XM_026946912.2 mRNA downstream 16001 2971867 ~ 2976245 (+) True cbr4
XM_026946989.2 mRNA downstream 128783 3084649 ~ 3100761 (+) True anapc4
XM_026946905.2 mRNA downstream 145528 3101394 ~ 3128120 (+) True slain2
XM_026946906.2 mRNA downstream 145528 3101394 ~ 3128120 (+) False slain2
TU341918 other upstream 456118 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 810533 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 943364 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1592808 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1687538 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 409412 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 411782 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 987629 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1032186 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 1107769 4063635 ~ 4069715 (+) False G289531

Expression Profile