RNA id: XM_026946862.2


Basic Information

Item Value
RNA id XM_026946862.2
length 5009
RNA type mRNA
GC content 0.47
exon number 7
gene id fzd3a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2336070 ~ 2354598 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACCGCGCTCCACGCACGCGTAACCAGAGGACGTGAAGAGCAGCCGCTGTGTGCTGACAGACCTGCGCgtgattcagtaaaaaaaaaggcctaCAGGGATTCGTTAAGAGCAACCCGAGGAATAGGAAACGACAACAGAGACGCCTTCTCAGGTAGCACCAGCATTCCCTCAGCTCAAACACAGCTGAAGCACGCGCTTTTGTTCAGCAGGGCAGCGCAGAACCGGGTTAAACCGGGAGGAGAAGAAGGCTCGTGCGTGGGATGCATGCATCTGTACAAGCTACTTTCTCTTTCACGGAGTGTGAAGACGCAGCAGCACCTACACACTGCATTTCACTGTAATGCATCAGGACATGCTGAGGCAGTAAACCagtaaataagttaaaaaaacaaaaaacaaaaaccaaggCCATACAAGTACAGCTGAAGATGGAACTCTACTGAGAAGATATTCTAGTTTCGCTCCAGCAAACAACAATGGAGATCACCTACTCCACCGACACCACCTCCGGAATACTTCAGCTCTCATCGAGTCAATGAGGCAACTCCAGCTGTCGTAACACACACCTATCCCTCCCAGAGACGCAGCCTAGAGTGACATCATTCCGTTCTTGCCATGTTTCTGGCTGGGTTTAGGACAATGGATCTTGCTTGGGTTGTGCTTTCCATGCTAACAACATGCACAGCTATCAACGTGCAGTCAGCAGGCAGCCACAGCACCTTCACGTGTGAGCCGATCACACTGCGGATGTGCCAGGGTCTCTCCTACAACACCACCTTCATGCCCAACCTGCTCAATCACTACGATCAGCAAACCGCAGCCCTCGCCATGGAGCCCTTCCACCCCATGGTGAACCTGGAGTGCTCGGCTGATATGCGTCCATTCCTTTGTGCCCTCTACGCACCCGTGTGCACGGAGTACGGCCGTGTAACCCTGCCGTGTCGCCATCTGTGCCAGCGGGCCAAGAGAGACTGCTACAAGCTGATGGACATCTTTGGATTAAGCTGGCCTGAAGAGATGGCCTGTAACCGGTTTCCTGAATGTGACGAGCCGTATCCACGAGCCGAGGACCTCCTCTCAGGTGCTGACTCCACAGAGGAATCTCCCGTGTCTGTACAACGTGACTACGGCTTCTGGTGCCCGCGCGAGCTGAAGGTCGACCCCGAGCTGGGCTACAGGTTCCTAGGTGTTCGTGACTGCTCGCCCCCATGCCCAAATATGTACTTCAGCAGGGAGGAGCTTGTCTTTGCTCGCTACTTCATCGCTGTGGTGTCTATCATCTGCCTGTCAGCCACGCTTTTCACCTTCCTTACCTTTCTCATCGACATGGGTCGTTTCCGCTACCCCGAGCGGCCCATCGTCTTCTACTCCGTGTGCTACATGATGGTATCGTTGGTCTTCTTCCTGGGCTTCCTGCTGGAGGAGCGCGTGGCATGCAACAAGGTGGCACCGGGACATTTCCGTGCTGCCACTGTCACACAGGGCTCGCATAACAAAGCATGCACGCTGCTCTTTATGACCCTCTACTTCTTTACCATGGCGGGCAGCGCGTGGTGGGTCGTGCTCACTGTCACATGGTTCCTGGCTGCTGTACCGAAGTGGGGCAGCGAGGCGATCGAGAAGAAAGCGCTGCTCTTCCACGCAGTAGCCTGGGGACTGCCTGGCGTTCTCACCGTCACGCTCATGGCGATGAACAGGGTGGAGGGTGAcggtgtgagtggtgtgtgctTCGTGGGTCTTTACGATCTCACCGCTTTGCGCTGGTTCCTCCTGGCCCCACTAGCTCTAGCCGTGACTGCTGGAGTTGTGCTGCTGTTGGCTGGCATTGTGGCACTGAACCGTGTCCGCATGGAGATCCCGCTGGACAAGGAGAATCAAGACAAGCTGGTGAAGTTCATGATCCGCATAGGCGTGTTTTCCGTGCTGTACCTGGTGCCGCTGCTGACCGTGATTTGCTGCTTCATGTACGAGCAGAGCTACAGGCCAGTGTGGGAGATAACATGGGTGCAGGAGCAGTGCAGGAACTACCACATCCCCTGCCCGTTCAAGGTGGAGCAGATGAGCAGGCCAAATGTTGCCCTGTTCCTCATTAAGTACTTGATGATGCTGGTGGTGGGCATCCCCTCTGTCTTTTGGGTGGGCAGTAAGAAGACCTGCTTTGAGTGGGCCAGCTTCTTTCACGGCCATCACAAAAAAGACAGTGTGGTGCACGACAGTAGACAGGTGCTGCAGGAGCCTGACTTTACTCAGCTGCTGCTGCGCGAGCCTGGAGTTACCGTGGTGCGCCATTCCCGTGGCACCTCCACACAGGGCACCTCCACGCATGCCTCCTCCACCCACCTGGCCATGCTGGATGAGGCACACAGCGGTAGCAGCCGTCCGAGCAGCGTGCACAGCAAAGCCAGCAGTTTCCACAGCAGCCGGCGCCAGTCTCACGATGGCAGGTACACGGCCTGTAGCGTCCGTGGTGCAGAGGAGCTCCGCCTCCCCCACGTCAGTGTATCCCGCCTCCACGAGCAGCTTCAGCAAAGCAGCACAGTTCGACTGGAGAGCCAATCACGACACGGCGGATCACAGCGCCTAGACAGCCAGTCACGACACGCCAGCACCCGGGACCTCAGCAGCGCGCAGCTGGCGGCCCAAAGCGGCCCTGTTAACGGTATCCACTCTGTCACGGAGGAAGGTGGAGCCACCCCTTGAACTTTACAAACACCAAGTTTGTAAATGAAGCACATGGTGGATGTCAAACAGAACTGCAAGCCCTGATACACCATTAGCTGCAGACGCAGCAGGAACTTTAGGAAAGCTCTCTGATCAAAGAGTTCAGTATCAACAGGGTAAACACTAAGGGCTTTTGCTATATTATCTTTTTAATACTCTATTGAAGCACTTGCTGCTTTATGTTCAGGCTTAGacttttgtgtacattttgtgtatgtttttaagAACCTTTTTAACCTTTATAGAGGGAAACAGGTTTATGTTCCACTGTTCCTCTATTGCACTTTGTGTAGACTTTCTTGGAttagatttacacacacaatacgTCTTCCTCCTGAAGTTCCACACGATTTCTCACATAACTAAGTACAACAGAAGTGAGTGATGACTGAATGTTTTATTGGTGATAAACATTTGGCATGTAAAGAGCAGTATTACAGAACAAACAGACTGAAACTCAATTACTTGCTGCAAATGTAGAATCATTTCATGTAGAATAATTTAGAATAAATTGACGAGTAAACTGTTATGTCTCACTTTATAGGTATCGGATAGGAGTTCAGTTTGGTCTTGAAAATGAATTCTTCTCATTTACAGTCTCTCACTAACTTGAAGTAGATCTCAGTTGTGTACAATTTTATAAACTCTGAAATTTGACCTATTTTGAACAGGTCCAGTGTTATTTCTCagccaaatgaaaaaaaaatccccagtgTCACATCATCATCTGTTTATAGAAATACATCAATTCAGTCCATAGATTTGGTTGATCTTCTGCTTGAtatctgtgcaaaaaaaattgccagCAGTGAGCTCTCGTCAGGAAAATACCTTCAACCTTCCAAAAGTGTGACAAAACCTAATACAGCCCTGTAACAGAACCAGGAAATGAGTACATCTAGCATgcaaaactgtacaaattattacaaaacaaaacaaaaaagtgatagatatatatataatagcaaAGAGAGCTGATGTGGACTACTGCAGAAATGTCACTAATTGTGCAACAGCTGCCTTATGCCTTCCTTCACGTGCTTATACGAGCTACAGCTGAAACAATATTGCAAATCCTGAGTTGTGAGCTGGCCAATGAGAGCAGGAATCTAAATTTGCACTGGAGAGGGGCGCCAATTATTCAGCAACACAGTATAACCGAACTCTACTGACCAAGTGAAACTTGCACTGAAAAAAGAGTCAGAAATGGTTTCCAGGAAAGAAAGCATGGCGATCTTTTAGCaatatttttgcacataatCACATCAGATCACAGAGGAAAAGCTTGTGTCCAACTCTTAAAGCTTTTAGTGGGGAACTTAACAATGGTCTATAGACCACTTCATTGAGTTTATCATGTAATATAATCTCAAAAGATTAATTAATGATGACAAAGTTTTGCAGCTAGCCTTCATAATCAAGTGGAACCTGTTCACAATATTTCCAGTAAATATACAATTAAATATCACGAtcaaaacacatttcttttatctttcttAAGTTGGGAATGTTAAAATGTGGGCGAAAATATGTTTCAACCAATAAATTATATGTATAACCTTGTTTGGGTCTCTTATAatagaggggggaaaaaacccagCACAGATGCTTCAATTCTACTcatggaaaattaaaataaaaattttgttaGCAACACACTGATCGATTTTTCAcaagatataaaataatgttgtaGTTTTCAGgaatcagataaaaaaaatgttcaaattaaataatgttggTAAAATGCAGCTAAAGAAATAAACTGATGGTTTCTTTGTTTGGTTTTCTCTCTACAGAATTtccttattatatattatactatactttCAGCCTATGTACATTATTGTGATGGAAATCTGACGTCACTGGTTTGCGGTGGTCTGTGGAAGGCTTCGATTGAACAGAACTTCACAGAACAACATTTCTAGTCTGTAACCACGTCCTTTTCTCTATCCTGTGTATATAGTGCTTTATTTCTGAAGTCTGACATTTTGTAGTTGTGTCTGGCAGCACAGTGGTGAATATCCAGTGCACTCGTGAAATCCCGCAGTAGGGATCTAGGTAGTGAACCCCAGCAATAACACGATATCGGTGTAGTTTGAAGGTGGCATGTGACCTGTGCACTGTTAATATGGCGGGGTCTGAGAGTGTTGGAGTGTAGGGCAGGTAGCAAATGTCTACGTCGGCTAAGAGAAAgctgtagccaatcagaatgGCAGTTTAAGTAGTAATCAGGTCTCGAGACTCATCACatttagagcaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007199 G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0001843 neural tube closure biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0001944 vasculature development biological_process
GO:0021754 facial nucleus development biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0045177 apical part of cell cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341720 lncRNA upstream 9782 2325658 ~ 2326289 (+) True G288512
TU341667 lncRNA upstream 117433 2215577 ~ 2218638 (+) True G288461
XR_004580150.1 lncRNA upstream 184833 2147215 ~ 2151238 (+) True LOC117599781
TU341394 lncRNA upstream 262190 2027343 ~ 2073881 (+) False G288225
TU341802 lncRNA downstream 93824 2448422 ~ 2453374 (+) True G288581
TU341932 lncRNA downstream 151971 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA downstream 151971 2506569 ~ 2510414 (+) False G288694
TU341983 lncRNA downstream 226711 2581309 ~ 2608373 (+) True G288734
TU341993 lncRNA downstream 273160 2627758 ~ 2628318 (+) True G288740
XM_026946983.2 mRNA upstream 123870 2189759 ~ 2212201 (+) True tdrd6
XM_026946939.2 mRNA upstream 154915 2162431 ~ 2181156 (+) True pla2g7
XM_034313859.1 mRNA upstream 177377 2151234 ~ 2158694 (+) True adgrf3b
XM_026946812.2 mRNA upstream 193890 2133158 ~ 2142181 (+) True LOC113546780
XM_034313449.1 mRNA upstream 204800 2124988 ~ 2131271 (+) False LOC117599673
XM_026947002.2 mRNA downstream 82100 2436698 ~ 2439040 (+) True lft1
XM_026946966.2 mRNA downstream 100195 2454793 ~ 2474603 (+) True kif26bb
XM_026946967.2 mRNA downstream 100195 2454793 ~ 2470912 (+) False kif26bb
XM_026946818.2 mRNA downstream 130438 2485036 ~ 2495853 (+) False cnstb
XM_026946819.2 mRNA downstream 130438 2485036 ~ 2495853 (+) False cnstb
XR_004580079.1 other upstream 194434 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 327265 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 976709 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1071439 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 1092399 1243057 ~ 1243672 (+) True G287892
TU341918 other downstream 135079 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1010680 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1013050 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1588897 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1633454 3988052 ~ 3988123 (+) True trnad-guc_14

Expression Profile