RNA id: XM_026946890.2


Basic Information

Item Value
RNA id XM_026946890.2
length 1313
RNA type mRNA
GC content 0.55
exon number 4
gene id zar1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3142883 ~ 3144734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCGCTCCATCAGGCGGCTAAgcggaaaaaataaaatggctacGTACGGAGACGAGTCACTCGACAACTACGTTTACTCCTCGTATAACCCTTACTCGTACAGATGCCCGAAGCCCAGGAGCTGGCGGCAGAAGAGCTACCTGAGCGCGTACAGCGACGGCGAGGGCTATTTCGACAACTACCACCGCGCGCAGCTCAAATCCATCCTGTCGCAGATCAACCCGAACCTCACACCGCGCCTGCGCAAAGCCAACACCAAAGACGTGGGAGTGCAGGTGAACCCGAAGGCCGACGCCTCGGTGCAATGCTCGCTTGGACCGCGCACTTTGGCTGCGCGCCGGCGGGACGCAGTGCGCAGGCGCAGACCGGATGGCCAGACACCCGGGAGCCCGGTGAGCACCGGGGTTCGGTTCCCGCGCACACACGCCGTGTACTCCCCGATCGCCACGCGGGGACTCGCGGCTCTCCTGCAGgaccatgatgatgatgatgatgatgatgatgatgagcagcAGAAGTGTGGAGGAAGGACAGAAGAGGTCGAGAGCACAGATAAGGGCGAGGAGCTGGAAGAGGGCGTGGAGGACAAAGAACCAAAACCCAAAAAATCCAAACCAAAGCTTAGTCCCAGGAAAAACAATGATGAAGGCGAGCAGATAAAAGTGGACGATGGAATCAAGAGTGAGAATGAGAAAAGCGGTCAGGACGACTCCAAGTCCAAGGGGAGAGTGCGCTTCCAGTTTTTGGAGCAGAAGTACGGCTACTACCACTGCAGAGAGTGCAACCTTCGCTGGGAGAGCGCCTACGTGTGGTGTGTTCAGGGCACAAACAAGGTTTATTTCAAGCAGTTTTGCAGAACGTGCCAGAAGGCTTTCAACCCATACCGGGTAGAGGACATAACCTGTCAGGGCTGCAAGAAGGCGCGTTGTACATGTCCAGGGACGGCACGCCACGTGGATCCTAAACGGCCACACCGACAAGACCTGTGTGGTCGCTGCAAAGGCAAACGGCTCTCCTGCGACAGCACGTTCAGTTTTAAGTACATCATATAGTGCGTCCTCTGATCCCTGCACAGAATCTATCCCGATGGCGGTTCACTGCTGTTCTAACTAATGCATGGGCAAGGATCTCTGCCATCCTTGGCCTCCACCAGGGACGACCTCCGAGACTGAAGCAGAAGTCTTGAAGAGGGAGGCCTTGTACCAGCGCCAAAGACTgtgatggtttttgttttcattcactTGTGTTAAACAGCAGCGGTCTCAGTAGTGAACCATTTCggaaaattgaaaataaatcgAAATTAACAGCA

Function

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342119 lncRNA upstream 162678 2978333 ~ 2980205 (+) True G288839
TU342114 lncRNA upstream 226073 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA upstream 272217 2870362 ~ 2870666 (+) True G288836
TU342050 lncRNA upstream 377828 2764270 ~ 2765055 (+) True G288789
TU341993 lncRNA upstream 514565 2627758 ~ 2628318 (+) True G288740
TU342216 lncRNA downstream 47373 3192107 ~ 3193930 (+) True G288927
TU342467 lncRNA downstream 134672 3279406 ~ 3288541 (+) True G289121
TU342480 lncRNA downstream 196667 3341401 ~ 3343744 (+) True G289134
XR_003404747.2 lncRNA downstream 219494 3364228 ~ 3368671 (+) False LOC113546783
XR_003404745.2 lncRNA downstream 219496 3364230 ~ 3368671 (+) True LOC113546783
XM_026946889.2 mRNA upstream 1166 3135733 ~ 3141717 (+) True slc10a4
XM_026946905.2 mRNA upstream 14763 3101394 ~ 3128120 (+) True slain2
XM_026946906.2 mRNA upstream 14763 3101394 ~ 3128120 (+) False slain2
XM_026946907.2 mRNA upstream 14763 3101395 ~ 3128120 (+) False slain2
XM_026946908.2 mRNA upstream 14763 3101398 ~ 3128120 (+) False slain2
XM_026946830.2 mRNA downstream 113439 3258173 ~ 3262050 (+) True ociad2
XM_026946945.2 mRNA downstream 119213 3263947 ~ 3277968 (+) True dcun1d4
XM_034313815.1 mRNA downstream 119260 3263994 ~ 3277968 (+) False dcun1d4
XM_034313814.1 mRNA downstream 122148 3266882 ~ 3277968 (+) False dcun1d4
XM_026946968.2 mRNA downstream 160319 3305053 ~ 3314463 (+) True spata18
TU341918 other upstream 646831 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1001246 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1134077 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1783521 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1878251 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 220544 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 222914 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 798761 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 843318 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 918901 4063635 ~ 4069715 (+) False G289531

Expression Profile