RNA id: XM_034313657.1


Basic Information

Item Value
RNA id XM_034313657.1
length 2512
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC113546823
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3905694 ~ 3917080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCGCTTTTGGCGCGTCATTCTTTCTACGCCTCCTGACGCGATGACGTCATGACGTCACGAAGGCTCCACGGTTTAAAAATTAGCAGTGCTGTAAGGCTACCAGAATGAACTGGGATAATCAGTTGAGTCACATTATCTCAGCAGCTGATGGCAGTGTTGCAAAAATACGTGAACGCCTTGCTTTTCCTGGAAGGCTttccagagaaagagaagATGTGTATCCAGTGAGAGATCTGAGTCATGCTACGGGTTTGGACCCTCCTGTACGTCTTAGCGGTGCTGTTCAGTGGACAGATCTGGCAGCTGTACAGGACCAGCTTCATAACCAGCGCCAGACAATTGAGGCCTTAACGCAGAACCTGCGGTcagtggagagagaaagagatgctCAACAAAGACAAATACAGACGTTGCAAGAGGAGGTGAGGAGGCTTCGGGAGAGACTGGAGGAccgggagaaggagagagaacgGAAGCAGGACATGGACGGAGAGAAGGTCCCCGCAGTGGAGATGCGGCTGGAGCAATGGAAAAGGGAAGTGGGACGGGAGCTGAGCGCCCTTAGAGGGCACATCGACAGGGCCACGTCTCTAGGCAACAGGGAGGAAAGTTTCAGCTCTAAACTGTGCAGGGAGGAGGTGGAACAGCTCAGGAGAGAGGTAGACCTGCTCAAAAGCAAGCTGATGAGGCATGAGGAGGATATGTACCAACAGCAGTCTGAAGCAAGGGAAATGAGGAGGCAGTGCGAGCGCAGCTGCAAGACACTGGAAACCGTCACCGATTCTTACCGCACACATGGCTTTGAACTTTCCAGGATCGTCTCACAGTATCAGCACACACAGCAAGACGTGAGAGATCTCAGaCTTACAATATCTGGATTGAAGGATGAAGTGAGAGGCCTAATTTCGAGAGACAGACTCGACACACCTGCAGAAAGGCCGCGGAAGTCaaATCCTTTGGAGGCAGCGGTTGCTGTGGAGATGAGTCCTCGGAGACGGTTTTTGTCAGACTCAGATGATGAATTGAGCCCCACCCCCAGTCTCGGAGACATAAGCTCAGATGACCTGGACACATCGTGGCTTGGGGAATCAGCCCCAGAAGTAAGAAGTCAAGGACGGGGTGCACGCTTGAGCCTGTCAGGAACTGATCTCAGCGACACTGCGAGTGGACTTGGGAGCAACCATGAAGACATAGATGGAAAAGTGGGAGGAGCTTCAGATGGTTCTCCAGAGCTCAGTCTCTGTGACCTTTGACtctagaaacaggaagtaaacagtGATTGCTGGTGCCAGTATGACCAACCATGTGGTCAGGGGAATCATTTGACATGTGAAATAAAACTAACCACAGGAAATTGACATGACCTAATTGACTAAAATACCTTGTTCTTAAGAAATGCACAGATTCACAATTGAATATTGCATACGAGTGTGTAGCTATGTGATGAAAGCCAACAATATTTTGTGATTAATGGAGTCTCTTATAATTTTCTGGTTTGTATAAGTGGAAAAGGCCCCGTTTATGGCTGAGTTTCTAGCTTCTAGATTATGTATTTTGCCTACTGCAAACAGTAAAAGCCACTAGATGTGTTATAAGAGTGGAATGAGTGGTGAAACAtcacttttgtgtatgttacTCCAAGCTACAGTgttcattcagtacattctttttttattaatgttgttgttttacagAGTTCAACAGGTGAAAATAATCTGAGAACTAGCCAATTGCACACTGTAATACTCAGTCTGTACAGAACATAGTGGTACTTCTTCTCCATTCGTTTTGAGAGTTCggtttcattttcagtgttaatcaTGCTGAAGTTAAAGCCACTTACATGTCAGTTTTGCTTCAAGAATAGACTCTGGCATTTCAAGTGCTATTTCAGTGCAGCTTTGTTTATGTGAATTAAGCCATGGATCTATTTTAAACTCTTTCTCAGACTGAGATATTTATTCATGTGAGGTTAGAAGTTGTGCACAGTGTGCTGATGAGCCTAGCCAGAAGTCTTCTTTATCTCACCCTTCTAGCGGAAACTTTTCAAGATGGGCCAACCTCCGCCTGAGAAACACattcatttcagtcattttccTCTTTCCGTTATCTGTCCTTTTATGTTCCTCTTTTAGACACTGAACTAtagcagaaagacagagattttttttttaagccttaATAGACACATGCTTattaagtaaattattttatgaatttaattaaattaaatgaggaaagagagaaggtgTTTTCACCTTGTAGTAATTtggacatttttgtttgtttgacaaCATTGTTATAGGTCAGATAAATCCATCACCCATGCAACTGTCACCAAACAAATGTCTGTCAAACTTACACAGGTAAAACTGATGACAATAAAGCATTTAATATGTTGTAAAGAaatttaatagtaataaaaaaaaaaacatttggaacATCAAACACgaaaacaggattttttttttttatacaaaacagCACTTCTGGCACATGAAGCAGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342784 lncRNA upstream 61015 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 166480 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 217778 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 411360 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 521812 3383677 ~ 3383882 (+) True G289164
TU342935 lncRNA downstream 25194 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 31116 3948196 ~ 3948458 (+) True G289517
TU342945 lncRNA downstream 67667 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 130129 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 137377 4054457 ~ 4069715 (+) False G289531
XM_026946996.2 mRNA upstream 3828 3897015 ~ 3901866 (+) False mgst3a
XM_026946994.2 mRNA upstream 3828 3897025 ~ 3901866 (+) False mgst3a
XM_026946993.2 mRNA upstream 3828 3897027 ~ 3901866 (+) True mgst3a
XM_026946995.2 mRNA upstream 3828 3897038 ~ 3901866 (+) False mgst3a
XM_034313927.1 mRNA upstream 3828 3897082 ~ 3901866 (+) False mgst3a
XM_026946902.2 mRNA downstream 26414 3943494 ~ 3976740 (+) False ipo13
XM_026946901.2 mRNA downstream 26417 3943497 ~ 3982694 (+) True ipo13
XM_026946977.2 mRNA downstream 74587 3991667 ~ 4016550 (+) True pfas
XM_026946956.2 mRNA downstream 107602 4024682 ~ 4045273 (+) True hook1
XM_026946957.2 mRNA downstream 107602 4024682 ~ 4045273 (+) False hook1
XR_003404754.1 other upstream 537922 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 540292 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1409642 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1764057 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1896888 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 26415 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 70972 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 146555 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 410391 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 411752 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile