RNA id: XM_026946902.2


Basic Information

Item Value
RNA id XM_026946902.2
length 3324
RNA type mRNA
GC content 0.51
exon number 16
gene id ipo13
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3943494 ~ 3982694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgagtgagagaaaggggagagagggagggagatggGAGGCGGCACCACGGCTTGTTAGCAACACTGCAGCATTGAGAACAGACACAGCCGGGCTTTTTATGAACATTTAACCGCTTTGGCAGGTAACAGACGCAGGAAACTGTCCTATAATGTGGACACACAGAGACGTGGTTCAGACTGAAGGCGTTTAGAGCAgaataaaaaccaaaaaccaaaacaaacatggctgaGCAATGCTAGCTTCTCCCTCGCTAGCTAAGACACCGCTTCGAGGCTCCTGTTCAGCTAGCTGATCTATCTCTGGCAAATTAAccaaagagaagaagaagaagaagaggtagAAAAGAAGAGTGTAAAAGCTAGgagattaaaaaacagaaacagaagagGTATCTGTGTTGAGTATCTGTCATGTTCGCCTGTGCTGAGAGCATGGAGACGCCGGCTaggacagcagcagcagcggcagcagcagcagcgagctCCGCCGACTTCACCGTGGAGAACGTGGAGAAGGCTCTGCACCAGCTGTATTATGATCCAAACATTGAGAATAAGAACCTGGCTCAGAAGTGGCTGATGCAGGCTCAGATCTCCCCTCAGGCCTGGCAGTTCTGCTGGGCTCTGCTCAGTCCTGACAAGGTCCCAGAGATCCAATATTTTGGCGCCAGCGCACTACACACCAAGATCTCACGCTATTGGGGTGACATCCCTGCCGAGCAGTACGACACCCTCAAGACGCAGCTTTTCTCCCAGATTGCCCTGTTTGCCTCAGGCTCTAAAATTGTGCTGACACGGCTGTGTGTGGCCCTGGCTTCACTGGCGCTTAACACTATGCCCGAGGCGTGGCCTGGCGCTGTCTCGGAGATGGTGCGAGTCTTCCAGGAAGAGGGGAGCACTGTGGACGGGCGCGCTCGCTGCCTGGCGCTGCTCGAGCTCCTCACTGTGCTGCCCGAGGAGTTCCAGACGAGCCGGCTGCCGCAGTATCGTCGGGGGCAGGTGCGGGGCGCTCTGGGCCGAGAGTGGGCATCTGTTTATCCCCTGCTTCAGCAGCTACTGCGTCAAGCTGACTCGCCAGCGCCAGTGAAGGCGCGTGCACTTAAGTGCCTGTCCAGCTGGGCATTGCTGGATGTGCCGCTCAGCGAGAGCGAGGGTCTGCTGGAAGCTGGCTTTGCCGCACTTAATGACCCTGAACTGTTTGACGCTTCCGTGGAGGCCATCGTCAATGCCATCTCACAGCCTGACTCTCAGagGTATCTGAACACGTTACTGAAGCTGGTTCCGCAAGTACTCCAGCTCCAGGAACAACTACGAGAAGCTGTACAGAACGGAGATATGGAGACGTCACATGGGATCTGTCGAATCGCAGTCTCGCTGGGAGAGAATCATTCCAGGGCTCTACTGGAGCAGGTGGAGCACTGGCAGAGCTTCCTGGCACTGGTCAATATGATTATGTTCTGCACTGGCATCCCTGGCCACTACCCTGTCAACGAGACCACAAGCTCTCTCACACTAACATTCTGGTACACTCTGCAGGATGACATCATGTCATTTGAGGCAGAGAAGCAGGCGGTGTATCTGCAGGTTTACAGGCCTGTGTATTTCCAGCTGGTGGATGTGCTGCTCCACAAAGCCCAGTTCCCTAGTGATGAGGAGTACGCCTCCTGGTCATCTGACGAGAAGGAGCAGTTCAGGATCTACAGGGTGGACATATCTGACACCCTGATGTATGTCTATGAGATGCTGGGAGCAGAGTTGCTTAGTAACTTGTATGACAAGCTAGGCAGGCTGCTTACCACTGCAGATCAACCAACATCCTGGCAGCATACAGAAGCTCTGCTGTACGGTTTCCAGTCCATAGCAGAAACGATAGATGTGAACTACTCCGATGTCATTCCCGGCCTTATCGGCCTCATTCCCCGAATCACCATCAACAACGTACAACTTGCAGACACTGTCATGTTCACTATAGGCGCGTTGGCAGAGTGGTTGGCGGATCACCCAGTGATGTTGAGCAGTGTGTTGCCGCTGGTGCTGCAGGCATTAGGGAATCCAGACCTTTCTATCTCTAGCGTTTCCACCCTGAAGAAGATCTGCAGAGAGTGCAGATACGACCTGCCACCCTATGCTACGAACATCGTTGCCGTGTCACAGGAAGTTCTTATTAAACAGATCCACAAGacgAGTCAGTGTATGTGGCTGATGCAGGCTCTAGGTTTTCTGTTGTCCGCACTGCCAGTGGAGGACATTCTGCACAATCTGCACTCTCTCATCACACCCTACATCCAGCAGCTGGAGAAACTGGCTCAAGAGACACCAAATCCATCTAATAAACTGGCTATCATCCACATCTTGGGCCTGCTGTCAAACCTCTTTACTACCCTGGACATCACCAAGCAGGAAGAGGAATCTGGAGAAGGTGCACCACCTGTCAAATCCAGCCCACCTCAAACCGGCCCCAACCCAgtagTGGTGGTGTTGCAGCAGGTTTTTGCCCTCATTCACACTGTCCTCAGTAAATGGCTGAATGACTCTCAGGTTGTAGAGgctgtgTGCGCTATCTTTGAGAAGTCTGTGAAGACTTTACTCCATGACTTTGCTCCTATGGTGTCTCAGCTGAGTGAGATGCTGGGTCAGATGTACAGCACTATCCCACAAGCCTCTGCACTAGACCTGACACGTCAGATGATGCATATATTTGCCAGCGAGTCAGACCACTTTCCCCCAATCAAAGCCCTGTTTGAGCTGGTCACCTCCGTCACCCTCACCATCTTCCAGCAAGgtGGCAGCATTATCAGAAGAGACCACGATCTAATTTTTTTTCGTTTTTGTACCTAATTTGGGAATCTcagtttatataaataaaacaaatcatgtaAAGTTCCCATCCCTTCATCCTGTGTAACATGTTGTTTGACATGCTGTTTTCCCAGATAATAGCTGTTCATCTTCTCCTGTACCTGTCTCCTCCTCGTCCCTTAAATTGTCCTTCAGTTTGTTTTTGCCTCTCTGTTGACCGATTAACATCACCTCTCTGTGTGCCGTTAACCCTCTGATCTCCAGCAGGTCCCTTAACTGTGGCTCTGAGAACCGTGGCCTGTTTTCctttggctttgtttttttgggggtaTTTCTGGGTAGATCGGGGAGGGCTGTGATGGGGGTCTTGTTTGGAGTGTGGGAACAGCTAGGGGAAGGGAGTTTTGGGGCTAGGTGCTGCCCCACTCTCTCGTGGTGAACAAGCTTTTCAGTGAACCCTGGGGTGGGGCAGTTGGGAAAGCATGCCTGATTTtaagaaaagtttttttaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342784 lncRNA upstream 98815 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 204280 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 255578 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 449160 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 559612 3383677 ~ 3383882 (+) True G289164
TU342945 lncRNA downstream 8007 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 70469 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 77717 4054457 ~ 4069715 (+) False G289531
TU342967 lncRNA downstream 77717 4054457 ~ 4070367 (+) True G289531
TU342971 lncRNA downstream 77717 4054457 ~ 4069715 (+) False G289531
XM_034313657.1 mRNA upstream 26414 3905694 ~ 3917080 (+) True LOC113546823
XM_026946899.2 mRNA upstream 26414 3905792 ~ 3917080 (+) False LOC113546823
XM_026946996.2 mRNA upstream 41628 3897015 ~ 3901866 (+) False mgst3a
XM_026946977.2 mRNA downstream 14927 3991667 ~ 4016550 (+) True pfas
XM_026946956.2 mRNA downstream 47942 4024682 ~ 4045273 (+) True hook1
XM_026946957.2 mRNA downstream 47942 4024682 ~ 4045273 (+) False hook1
XM_034313865.1 mRNA downstream 48148 4024888 ~ 4045273 (+) False hook1
XM_034313866.1 mRNA downstream 48148 4024888 ~ 4045273 (+) False hook1
XR_003404754.1 other upstream 575722 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 578092 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1447442 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1801857 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1934688 1996797 ~ 2008806 (+) False ptchd4
trnad-guc_14 other downstream 11312 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 86895 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 350731 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 352092 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 356818 4333558 ~ 4333629 (+) True trnad-guc_18

Expression Profile