RNA id: XM_026946906.2


Basic Information

Item Value
RNA id XM_026946906.2
length 4127
RNA type mRNA
GC content 0.50
exon number 9
gene id slain2
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3101394 ~ 3128120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttggtcaaaattatatatatgatcctagaaatactgtatgtgaatCCTTTCAGAATGATGTAGCATTATAGCAactgattttgtttatttaattactatcaacatatttttaaagtgtCTACAAAAGTGTGCgggcaaaagtttacatccccaaTTGTTtatgggtttaaaaaaaggaaaagaaaaagcgcGTTCACGTGAGCCGTCACTCCCAAAACGTGCTCGTTCCTGCTTGCATGCGTGATGACGCAACACGTCAGCTTTTTCCGCTTTCCCTAATTGGTAACTGACGGACGGTAAAGATGGCGCCCAAGCCGCTCGTGTGTTTAACTACTAAGGAAAGATGACGGTCATAAGCACAGGAGCGTACTTTACAGCTGCGTCATTGACGGTGTAGAGTTAGGAGAGTTTAGGACTAACACTTGAGCGGCTTGTTGACTTGTTAGAAAGCCATTTTTCGGGCTGTAGTTGGTGCTGCTGCGCCCCAATGGAGGACATCAACTCGAACATCAACGCGGACCTGGAGGTGCGGAAGCTTCAGGACTTGGTCAAGAAGCTCGAACAGCAAAACGAGCAGCTCCGGAGTCGCTCCGCTCTGCTGTCGACGTCCGGAGGCTTGGCGGCCAACGCCAGACCCCTGAGCGCGGGCTACGACTCGGCGCTGTCGGCGGGAGCGGTGGCGGTGGCGGCGGCGGCGGGGCTGGCGGGCTTCACCGGGGCGGGGTTCGGCGGCATGCGGGGCTTCGGCGGAGCGGCGCCGCTGGAGAACTCGCGCTGTCTGAGCCCCAGGCGCTCGTACCATGGGAGCTACGGGTCGCCTTATGACTGCGACGCTTCTCCCGCTGCCACAAACACCGGCGGCGGCAGCAGCCCGTATTACCACCGCGAGTCTGTGGACTACAGCGAGGACCGAGAGTCTTCTGTCCTGGACGAGGTGGAGATCCTGGACCTGGAGGACATGGACTGTCTGAACGAGGACGAAGACAGCTGGTTGTATGAGGCAAAGCTGAACAGCCCTCTCCAGAAAGCACTCAGTCCGATCGTGTGGTGTAGACAAGCCCTGGACAACCCCAGCCCTGACATGGAGTCAGCCAAACGCTCCCTTCTCCACAGACTCGACCTCACCATGAcagCGAATAAGAGGCGGAGTCTGTACGGCAGTACCTACAGCCCTCAGGTGGCTTACGGAAGCTCGTGCAGTCCAAACGCAGCCAACAGCCCGTACAGCAGTGGCTTCAACTCCCCTTCCTCCACTCCCTCCAGAGTGCCTATCGTCAAGCAACTAGTACTGCCTAGTAGCACAGGTTATCAGCGTGGCTCAGTGGACAGAAACCCCCCAGCGGTGAGCCCTCAGTCGTCAGTGGACAGTGAGCTGAGCACTTCTGAGATGGACGAGGACTCCGTGGGATCTTCCACCACCTACAAGCTCAATGATGTCACCGATGTGCAGATTCTCGCCCGCATGCAGGAGGAGAGCCTACGTCAGGACTACGCTGCAACAGCGTCACGCCGCAGCTCGGGCTCCTCGTGCCAGTCCCTGAGGCGTGGAACGCTCAGCGATCAGGAGCTGGACGCACAGAGTCTGGAGGATGACGAGGAGGCAGCGATGCCCATGGCCTACCACCACCCACCCATCACGCGCTTTAGCCCCTCCCCTCGCGTCTCGCCCCGCGTCTCTCCTCGCCACTCTCCTCGCTCGCGTTCACCCGCCCGTGCCTCGCCACAGCCAATCATGAGCCGCCTGCAGCAACCCCGCCTCTCACTGCAGGGTCACGCCCATGAGCCACACACAAACGCCATCAAGAACGAAGagaaatTACGGCGCAGTCTTCCAAACCTAACACGTTCCAGCTCCGGCCCTGCTGCCGAACCTGTCAAAAACAGCCGCAGCTGCGAGTCCAACCTGCAAGTGCCAAACGGATCCCCCCGACACCAGAGCCAGTCAGccaCGCAGCACCAAAGGCTCTCCGGGCCGGCGCGCGCCTCCCCGAAACCCAAAGAGCGGCTGCAGAGCCCCACGTCTCTACGAGTTCCCCCTAGCAGTAAGTTGCGCACACCGGCAGCACCATCACCTCTCGCCCTGCGACAGCCCATGAAGGTGGTGTCTAATCCTGGTTCAGTCACTACCACGCCCACTCGCTCTCTGGCCCCGCCTCGTAGTGCTCTGCCTCGCCCCAGCGGCCCTGCTGCCGGGGGTTTACCTGTGCCTCGCAGCAAACTGGCCCAGCCTGTGcgcagGTCTCTGCCAGTTCCTCGCACTTACAGTGGTATCAGGGATGAGAGCTGGAGAGAGGGATGCTACTGAGAAGCCTACAGCACAGAGACGGACTGTCCGACCTGGCACTTTACTGATCGACACAAATGAGCAAGAGTTCCACTCTTACTATCCCCATACAATCAGCGCTGAAAGGAAATTCTCACATCAGTGAGGATACTCATATCATGGCTGGCTGGAAATCAGTGAATGCCAAAGAACCTGACTGAGATGTACACTTTCTGCCACAGGGCTGCGCTCACACTCCAACCGAACAGCTCCTACAGAGAGAACAGATCGAACCCATCTCTCTCTAATAAACTATTAAACAGCTTATTGTCACGCTCTGCTTCTGCACCCTGCGAAGGAGACCCTTGACTATCGCTACTTgcgtattattttattttccctgtAACGGGCCTGTTGCAATCTTGTCAGGGTGGAATATTATGTGAAACTATTCTAATGGTGTTTCACGATGTGTAGCTTGATGGCcatcccttaaaaaaaaaataaaaaaaatggctgtatggTGATCAAACCCCTTAGTGTCTTTCAGCGGGAATGTCTTGTCATTTCTATGtgacaattatttatttagagatcattatgtaaaagaaattatttacagaatatATTCCAACTCAGtatttgcttttgtttggttttttgcatttttagttctgaatgttaatattaatgttaaaccTCAACTATAAAGCTACGTTTCCAAAGCATTGTTTTGATGGATCCATGGCAAACTGGCTATGTATGTTTTAAAAGGTTTGAGTTCACTGGGTTTTAGTTAACAACTATGAGATTCACCAGGGttgatatttttatagtttttcaGATGTAACCTTGTAGAATCATGGACTGGAGGATCATGGGTATTACTATATGTCCAAATGCGTAGTACTCTGTGTCATTGCCCAAACTGTGAGTGAATCATGTCCCAATTTGGCAGTCAAATTATTGTAACCCATTCGATGTTGAACATTAAGTGTTGCGAAAAGAGTCGTTTGTGCATGTTACAAACGCTGATGGATGGTGAGTCGATCCGTCTGTCTCCTGCTCAGGGGTGGGGGAGGTGGGAGGGGGTCATAAAATGGCATTGTGACGTGTAGTGTGGTGGAAAAGAAAATAAGTGAAAAGTGTTATCATTATGATCTCTGCCATCATGTTGAAGATGGAATTGATTTAAAACCCAGTTTTTGACcagtttgaggaaaaaaaaaaatctctggtaATTTGGATGCACATTCATGGTCACGGTCCAGCAACGGGAAGTGGACCAGCTACGGAAGCCTTTAAGGCGATACATGCACACAACGGGTCACCGCGTTATTGCAGTGAGAGATCAAGAATAAACAAAACCGCACCTGAATGGCAATGCCACTTCAGACTGCGAAAGTTTTAAACATGAGTGCCTATAATTTATGAAATTGTGATTACTCTGGTGTctttgtttgcattttataagtttcatttttttgtgcCAACAGAGTTGATTTTGCCATTATTATTTGCTTCAGGGGtctctgcatttctttcttgAGTTTTTGGCtgatacattattatttttttggtttttgtaaTTGCTTTGATAACATTTATATGTATGTTATAAACGCTTTGATATTTATGACTAAATGCTCTGATGTAATAAGAggcttatttattaaaacagagCGAAACCTGTGCACAGTGCGAGGCAGCGTTGGTGGGACGTCTGAGCCTGGTCTGGGCATGAGGACACTCGTGCCACACCATATTGTGGACAgttttgttaaacatttttatatctcCACAAACATGACGCTCAGTTTTTTCCCCTGTGTtcacatttcaaataaaatgtctaaaatggCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342119 lncRNA upstream 121189 2978333 ~ 2980205 (+) True G288839
TU342114 lncRNA upstream 184584 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA upstream 230728 2870362 ~ 2870666 (+) True G288836
TU342050 lncRNA upstream 336339 2764270 ~ 2765055 (+) True G288789
TU341993 lncRNA upstream 473076 2627758 ~ 2628318 (+) True G288740
TU342216 lncRNA downstream 63987 3192107 ~ 3193930 (+) True G288927
TU342467 lncRNA downstream 151286 3279406 ~ 3288541 (+) True G289121
TU342480 lncRNA downstream 213281 3341401 ~ 3343744 (+) True G289134
XR_003404747.2 lncRNA downstream 236108 3364228 ~ 3368671 (+) False LOC113546783
XR_003404745.2 lncRNA downstream 236110 3364230 ~ 3368671 (+) True LOC113546783
XM_026946989.2 mRNA upstream 633 3084649 ~ 3100761 (+) True anapc4
XM_026946914.2 mRNA upstream 125149 2967201 ~ 2976245 (+) False cbr4
XM_026946912.2 mRNA upstream 125149 2971867 ~ 2976245 (+) True cbr4
XM_026946817.2 mRNA upstream 145528 2951771 ~ 2955866 (+) True grcc10
XM_026946889.2 mRNA downstream 7613 3135733 ~ 3141717 (+) True slc10a4
XM_026946890.2 mRNA downstream 14763 3142883 ~ 3144734 (+) True zar1
XM_026946830.2 mRNA downstream 130053 3258173 ~ 3262050 (+) True ociad2
XM_026946945.2 mRNA downstream 135827 3263947 ~ 3277968 (+) True dcun1d4
XM_034313815.1 mRNA downstream 135874 3263994 ~ 3277968 (+) False dcun1d4
TU341918 other upstream 605342 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 959757 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1092588 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1742032 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1836762 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 237158 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 239528 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 815375 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 859932 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 935515 4063635 ~ 4069715 (+) False G289531

Expression Profile