RNA id: XM_026946915.2


Basic Information

Item Value
RNA id XM_026946915.2
length 6605
RNA type mRNA
GC content 0.44
exon number 21
gene id kita
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3781390 ~ 3808749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTCCAGAGCTGACACTCCAGTGGCATTAGTGAGTGCCCAGGATACCGAGCGgacgcatacacacataaacacactcactcacacgcgcgcgcgcatacacacgtgcacacacacacacacacacacacacacacatacacacacatacatacacacacactaagagaAGTATAGATGGAATTCTGAGAATGGAATACCACTGGGTTCTGTTTCCTGTCGTGTTACAGTTTCTCTTCCGACCAGgcaCTACCAGGCCCGTAATTACTCCAGACGGATCCCAGCTCGCGGTGCAGCTGGATGGCAGCCTCATTCTTAGTTGCCATGGTGATGCACCAGTGCGTTGGGTACGGGACGAACGTCCAAACCGGACACTAAGGGAGGAGCAGAGGGAGCACCAAATGTCAACCATCAATGTGGCCAAAGCGAAGGCACAGCATCAGGGCAAATACACTTGCTTGGAGGAGTCCTCAGGAGAGAAGAGCTCTATTTATGTGTATGTTACAGCCTTCCTCTTAGCAGATCCTGACAACGCCTTCAGGAGGTCCATCATCCCAGACATCATGGCTGGTGCAGGAGACACTGCCTCTATCCCCTGCCTAGCCACCGACCCCAGAATGGTCGATCTGCACTTGGAGACGTGCAACGGACTTCCACTGCCCACCGGGATGAGGTACAGCGCTAGCACTGAGACAGGCATTTCCGTGGTGAATGTCCAGCCCAGCTACAAGGGATGCTATGTCTGCGTGGGAATTCTGGGAGAGAAGATTGCCCGATCTAGGGAATATAATCTTAATGTGCGACTGGTTCCAGATGCACCACCCCGTATATCACTTCAGGAGCGTAACAGAGTGCTTCTAACCCAGGGCCAGAGACTCACGCTCACTTGCTCTACTTCCAATGTCAACAGTGACATCAAGGTTAACTGGTTCCCACCTCATGGTGTGGAAGCATCTGTGCAGCAAAGCTCCCAACTTTTGACCGAGCCAGTCCTGCACAAACGCACAGCCACCCTCCAAATACCAGCCGTGACAGCCCAGGATTCGGGTAGCTACCGCTGTGAGGCAAAGAACTACAGAGGGATTAGTGCTGAGACAGTCTGGGTGGATGTCTACAGCAAAGGATTTATTAACCTGACCCATGTAGTTAATGGGACATGGAGAGTGCGAGAAGGAGAGAGTCTGTCCCTGAGTGTGGATATGGAAGCCTACCCTAAACCACACGTCTTCTCCTGGAGCTACAATCAAAAAAATCTCACTAACACAACTGACCATGTtatcaccacacactcacatgcacacagTTATCACAGCCAGTTAAAGCTTGTGCGTTTAAAAGTATCAGAGAGTGGCGTCTACACTTTTCTGGCCTCCAATGGTGATGCTAGTATCCACCTGACGTTTGAAGTTCATGTCCTAAGTAAACCAGCAATTGTATCTCATGAAGGTCCAGTTGATGGGCAAGTGCGTTGTGTGGCTGAAGGTTATCCCCCACCTCAGATCACATGGTACTACTGCGACCAACCCCATGCCAGGTGTTCTAATTTATTAAATGCCACacaagaggaggaggatgtCGTCACTGTAACCATGACTAACCCACCCTTTGGGAAGGGAGCGGTGGAGAGCCGCTTAAACATCACCAAGAACAATTACCCCACCCTGGAGTGTGTGGCTTCAGCCGAAGGCGAGATTGTCTACACACTGTTTTCCATCAGCGaacatACTGTTCCTCATGAGCTTTTTACTCCATTGCTGATTGGCTTCATTGCTGCAGCAGCCATCCTTTGCCTCATCCTGTTTGTTCTCACTTACAAGTATATGCAGAAACCTAAATACCAGATTCAGTGGAAAGTCATTGAGGGAATCCATGGCAACAACTACGTCTATATTGACCCTACCCAGCTTCCATACGACCACCAGTGGGAGTTTCCGCGGGACAGGCTGCGATTCGGCAAAACTCTTGGCTCAGGAGCATTTGGGAAGGTGGTGGAGGCCACAGCGTATGGAATGTCCAAGGCTGATACAGTGATGACTGTGGCAGTCAAAATGCTAAAACCGAGCGCTCACGCCACTGAGAAAGAAGCTCTGATGTCAGAACTGAAGGTGCTCAGTTACCTTGGCAACCACATAAACATCGTCAACTTACTGGGTGCCTGCACTGttggagGTCCGACTCTGGTGATAACCGAGTACTGCTGTTTCGGCGACCTGCTGAACTTCCTGCGCCGAAAGCGTGACTGCTTCTGCTGCTCCAGACTGGGAGATGattcttactatagaaatgtcTTGTTATATCCAGATGCAGGTGAAGGTAGAAACGGCTATATGACTATGAGGCCTTTGGTTTTGGGAGCTCAGTCCACTGAGAAACGTTCACTACCTAAAGgtGCTGGCTCTTACACTGACTGTGACGTGTTCAGTGAGGTTCTGCAAGAGGATGGTTTGGCTCTGGACACTGAAGACCTCCTCAGCTTCTCTTATCAAGTTGCTAAGGGCATGGACTTCCTGGCATCTAAAAATtgtattCACAGAGACCTGGCAGCCAGAAACATCCTCCTTACACAAGGTAGAGTGGCCAAGATCTGCGACTTTGGACTTGCCCGTGACATCACTACTGACTCCAACTATGTGGTTAAGGGAAATGCCCGTCTGCCGGTGAAGTGGATGTCTCCTGAGAGTAtctttgagtgtgtgtacacGTTCGAAAGTGATGTCTGGTCTTACGGCATCTTGCTGTGGGAGATCTTCTCTCTGGGAAGCAGTCCTTACCCAGGTGTACCTGTAGACTCCAAATTCTACAAGATGATCAAGGAGGGATACCGAATGGATTCACCTGAGTTTGCTCCGAGTGAAATGTATGAAATCATGCAGTCATGTTGGGATGCAGACCCCTCCAGGAGACCCTCATTTGGCAAGATAGTGGAGAAGGTTGAACAGCAAATCTCAGACAGCACCAAACATATCTATCTGAACTTCAGCTCCAGGTTGCCTGTAGTCACAGGTCCTCGTGAGGAGCCTTTTTCTCACTCCTCACGCCGTAATTCAGGAAGCGGTCACAGCACTCCCACTCTGCCTCTACTGTCCAGTGATGAAGTTTTTGTGGAGGAAGCAGCTCCCAGGCAGCCACGCgcataaaaaaaacctccacCAAAATGCTGGATCATCTACTAAGACTGTAAGCCTTTCAGACAAACCCAGGCTGAGTGAACTAAGCGAATCCTGGAACAGTCATTAGGGCAGAAAGAAGTCACATCATCTTCCCACTCTCTTCCCCTTACTGATGTACTTAGGGGATGATGTGCAGAGTACTTTCACTCTTTCCCCATTGCTTCAGGATCATGTGACATGGGATGATGGGACATGGAAGTTTATGGAgagttttactttttcttttctttttttttttttttacttctgcaCAACAGGCCTAACCTGGTCCTTTTGTGGTACGATTTTTAACTCTGCACAGGTACTGGGGAACAAAGTTTATCATATATCAGGCTCTATATGTGATCATAGTGCATACACATAAACAAGATTGTGATGTGTATTTTCATGACCATCTGTACTTGTGGTAATGTGGTGTAGAGCAGTGCAAATGTGTCACAAAGGCGGAGACTTAAATAGTAgagtgtatgttttatttttcggATGGCAACAGTCCAAAATCCACAGTCATTTAAAACATACAAAGGGATAAACATACAAATACCAGGCTAATGCAGAGATCAAATGTGTGTTGAAGTGGGGGGATAAATAGCAAACACCAGTTGTAAGAACTAGGACAGGACTTACAACGCTGCATCTTAGCCATGTGTCTGTGCTAAGAGAGGGGCAACAGGGGCTGTAACGTGCATGCGTTTTTACACCAGAATAGATTCTGAGATCCCACACCTGGTTTTGAATTTCACACCCAATTTTTCACCACTTAACCCACGTCAACGCAGCATGTTAATTTATGGTCATGAAAATAGAAACAGAGCACAACCGTAAAAGAATTGGCTTGCGTCCGACCAAATATACCAGCTTTACCCAGCAATTTATGCTAGCGCTAACGAAACATAGAGCCTCATGCCTTTGTTTTTGATTCATAGGTCAATACAAATGGTCAGGaaagcacttttaaaaaatacgATCAATCATTATCTTGGATGTAATGCTCTttcttacagtatatacatacatgtccTGGGGTCTTTCTTTTTGAAAGCacatattgttattgtgtttggTATGATGGGGTTTAGGCAGCTTCAGGACAGTTTAGTAGAGATACACTGCCTCAGTATTATTCAGTTGCAGATTGAGTACAGTTTTGACACCATGTTTTGCTTATATTCAAATGACAGCTTAATAACTAGTTGAAGTGCATGTTATTTTCCTCTGGTCTCTACATTTCTGGTAGCTGCAGTGAGTACAAGAACACGACAGCTACATATAAACTCACTTCTTTTTCTTAAGCAGTTATTAGTCATagaatttttttctgcttttcctgtTATTTCAGTGCAAAGAAAATACTCTTTTGGGACttctattaatatttttttcagggAACCAATTTAAGTAGCATCTCAAAGTGTTAAATTGCAAATGATGAGCTTTCTGGGCTGAATAACATTTCAGCTTTAAGATCAGTATTATGCTTGGATTGTTATGTGAAGGATTTTGTCTAGTACTGTGTGAAACTTTGAAAACCAAATTTGACAGAGTCCTTCAGGCTTCCCAAATACAAGATAGCAGAGGTAAACCAGCAAAGTCGTTAAGCTGGTTCAAAAAAagacttgtttttaaaaaatcaattcaCCTTCTACTCATCTACTTGTACTGTTGTCTCTACGTAGACGTGGCTGAATCGTATAAATTTTACTGAAAGACAGAGTCTATTGTGTTTCCTCAGTCAATCTCTCACATTTCACATGTACATTTGTCTGTGGTTTAGGTGCTTCTGCCTAGACTTAGGAATAGTTGAAGAGCTCAGTAGCATTTGAAACTGCATATTTTGTGAGGAACAGAGAAATGTCTCAAGAGACTccagtttaaacattttaaggTGTTGATAAGGAGGCAGAGTAATATGTTTTTGTAGATATGTAAATTTTTTTGAAGCTTGTTCGTATAAAgatattgtactgtatattatccTTTCTGTTCACATGTTTATAAAGAAGTCACCTTTTTTGTCATTATACACAGTATATGAACAATAAGTGTTGCAGAGAATATTCACTCAAGCTTAGGACATTAGAATTAGGCTAAGAAGATGCATCAGGAAACCTTTGAAGTCTCAGCAAACACCAATAATTTATATACGTCACCAACTGTTGTGCCTCACAGTTAACACTTAGATTAGAATTCTTTGCCAATAAGAAATTTGCTGTTGAGGAAAGAGCCAATAGAAAGCTACTGCTCTTCAGAAATGGGTGCCAATGGGTGCACGCTCTCCATAAGAACAGCCAGTGGGAGACATACCAGTGGATCCACCAGTGGAGGGGTAGCTGCTCTGAAAGAGAGCCAATGAGAGCGTTGTCATTCTTGTTGACCTGCCAATTGGGAAAAGAGCAGCCCTGCATTAGCGATGGAGAGTTCATCGGAATCCTAAGACTACAAGCAACAGACTGAGTGATTCAGACTGTGCCAGGTAGACCAAGTTGTAACATCAGTAGTCAGGCACCCGTCAGTAGCTGATTTCCCAgctctctttctgttctttgtGTCCAGCTGCTTCCTCCAGCGGAAGTGTCACTTCCAGGGCGCTTGATTTGGGGAGATCCCAGCCGCTCTCTATCCCACCTCCACTGCTTCCCTCTCACCCTCTTCCCACAGTGCGACATTGTTCTGAGTGGCATCTGtctgcacttgtgtgtgtgcgtgtgtgcgtgtgtgtgtgcgtgtgtatgttcATTGTAGCATAATGCAGGTCATTTTGCTGGTAAGACACCAGAGCACTGATGAGCTATCATTTATACAGCTTGTCAGATACACTGTATACCATAAACTGGCTCCCAGCTGCCGGTTTGTGTACATGATACCATTCCTGTGCTTTTGCTTGCTCTATAGCAATATCTGTAAATGATGTAATGTCACTATTTTTAGGGCAATGTGGTACGTTCTTGCTAATGCTGTAAACATTTAAGtgcaactatttttttttgtgtggttttcatactatttaatatttactttgtaTATCCATTGCATAAATGTTACTCTACTAGTTCCACGCATTGACTATGTGTATGCATTAAGGTCCTTAAATAACAGGTGGCTTAATTGCCTGTAGCAGATGTGCAACTTCATTCACATTTGGTACAcctagtatacagtatatcaaacaTCTAATCACATATAAACCGATGTAACATCATCATGTGGTAATAACTATATGATAATGCATGGATTATCTCAGTAGGTCTGTTTTTGGACAAATTATTGGAGATTTTTTTGTCCCTTGAAGAGAAGGTTTGTTCTGTGCACTTCAtcattgtatatttattttaaagtttttattttgcaagactctgaaatgttttattgtgtaaGAACTGTCATGTGTGTCTGTCAAGTcttattatatactgtaaataaaccaCTGAAACATGAA

Function

GO:

id name namespace
GO:0038093 Fc receptor signaling pathway biological_process
GO:1902362 melanocyte apoptotic process biological_process
GO:0038109 Kit signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019955 cytokine binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0004716 obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity molecular_function

KEGG:

id description
K05091 KIT, SCFR, CD117; proto-oncogene tyrosine-protein kinase Kit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342764 lncRNA upstream 42176 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 93474 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 287056 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 397508 3383677 ~ 3383882 (+) True G289164
TU342502 lncRNA upstream 411536 3364238 ~ 3369854 (+) False G289145
TU342784 lncRNA downstream 34366 3843115 ~ 3844679 (+) True G289378
TU342935 lncRNA downstream 133525 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 139447 3948196 ~ 3948458 (+) True G289517
TU342945 lncRNA downstream 175998 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 238460 4047209 ~ 4055985 (+) True G289533
XM_026946932.2 mRNA upstream 27959 3731642 ~ 3753431 (+) True pdgfra
XM_026946931.2 mRNA upstream 30296 3733913 ~ 3751094 (+) False pdgfra
XM_026946969.2 mRNA upstream 60902 3718106 ~ 3720488 (+) True gsx2
XM_026946854.2 mRNA upstream 196385 3554737 ~ 3585005 (+) True fip1l1a
XM_026946855.2 mRNA upstream 196385 3554737 ~ 3585005 (+) False fip1l1a
XM_034313897.1 mRNA downstream 70073 3878822 ~ 3885661 (+) True LOC117599795
XM_026946996.2 mRNA downstream 88266 3897015 ~ 3901866 (+) False mgst3a
XM_026946994.2 mRNA downstream 88276 3897025 ~ 3901866 (+) False mgst3a
XM_026946993.2 mRNA downstream 88278 3897027 ~ 3901866 (+) True mgst3a
XM_026946995.2 mRNA downstream 88289 3897038 ~ 3901866 (+) False mgst3a
XR_003404754.1 other upstream 413618 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 415988 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1285338 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1639753 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1772584 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 134746 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 179303 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 254886 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 518722 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 520083 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile