RNA id: XM_026946932.2


Basic Information

Item Value
RNA id XM_026946932.2
length 7022
RNA type mRNA
GC content 0.45
exon number 29
gene id pdgfra
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3731642 ~ 3753431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATCAATTAGAGAGCGCATGAGCGGCGGTGCAGgcgcatgagagagagagagagagagagagagagactgcaaacactccacacacacacacacacacacacacgcacacttacATACATACGCACTGAGGATTAGAAGCGCTCCAAAAGTCAGGAGGACCCTTACCAGTGCTCAGTGGAGAGTTGTACAGGAGTACTGCCATtcagcttgttttgttttttttttctttcatcgaGGGAACACacaaaaggatttttaaaaagCTGAACACAACCTAAGCAATAATGTGGATACTGAAGACACATCTCCTTTTGGGGGTTGTCCTCTTCGGAATATTGcaaaATGGGGCGTGTGAACTGCCTCCTCCGATCATCGTTTCGGATAGAGGGGAGTTCGTGTTAGAGCTGCACTCCGTTTTTAACATCAGCTGTACAGGGAATAAGAGCGTCGTGTGGGAAGAACCGCTACCAGTTAACACACACGTGCTGCCCGGGTATTACACCACTACGCTGCTGATTGATGGCGCCGCAGCTCATCACACGGGAGAGTACACGTGCATTTACAATGACTCAGATGAAGAGCAGCCAAACATAAACAACATGGCCAGCATCTACATTTTCGTCCCAGACCCTGAAGTTCCATTTGTTCCTGACGATCCGACAGAGGCCTCCCAGTTTAACATTCCTTGCCGCATTACGGATCCGCAATCTACTGTGATTCTACGGAGTCTACCAAGTGGAGATGTGGTCCCATATGAGTATGAAGAGAAGTATGGATTTTTGGGCTCCTTTGTTCCTGGCCAGTACGTGTGTGAGACTGTTGTGAATGGTGAGGTGGTCCGGAGCATGGTGTACCCAGTGACAGACAGGCCAAaTGGGTCAGATATGTTTAATGTGATGGAGAACGATTTCAGTGTGAAACTAACAGCCAGTCAAGAGGAGATAAAAGAGGGGGAAGCTTTCAACCTGACCTGCACGGTTCCACCTGGTAGTCTCTATGTCCAAAAATGGTTGCATCCCAGTAAAGAGGCTGTAGGTGCTATTCAGAAGAAGGAGACCTACCCTGATAAGGTTTTGTATATCCTCAGTATCCCACATGCCTCAACGAATGACACTGGCTTCTACGAATGCTCTGTCACAGAGCAGTCCAGCGGCAAGACCCACTCCTCCCAAGTGACCATCACTGTCCATGAGAGTTCTTTTGTTACTTTGGATCACAGTGGGATTGGAGCAGTAGAAACCATCTCTCTCCTGGAGGAAGCTGAATTCACCATTTACATCCATTCCGATGCTGTTCCCAAGGTCACGTGGTTCAAAGATGACAATGTATTGAATACCAATTATATAACTGCCAAGACCACTCTTCTAGCAGACAAAAGGTACGAGAGTGTTTTGGTTCTGCGACACCCTGTAGAAGAGGACAGTGGAACATATAAGATTTTAGCATCAGCTGGTTCAAAGAGTAAAGAGTTCTCCTTCAAACTCTATGTTAAAGCTGGTGAGCCCCAGATAATACAGTCCATGCTGGCTCCGGTAATCTGGCCCAGGGAAGAGACTATGGTGGTGTTCCTTCACTCCATGTTTAGACTGACGTGTCGGGGCCAAGCAGAGGTGGTGTGGGAAGGTCCCATCCCCCTTGACAAGCAGAAATTAGATGACAAGAGAGGCCTGTTCGTCTCCACAGTGACTGTGGACAATGCTGaggccacacacacaggagaataCACCTGTCTCTACAAGAATGAGAATCAGACAGAGGAGAGCAGCATCTACATCTTTGTGCCAGATCCGAACATACCATTCGTGGCCCCCCCACTGCCCTTTGGGCACCATGTGCTGAAAAGCCCAGAGGAGATGGAGGTTCCTTGCCGCGTGTCTGATCCGAGTGCTCAAGTCACGCTGTTCCATGTGGAGACTCAGCAGGCCGTGCCCGCCACGTATGACAGCAAGAAAGGTTTTCTAGGCAACTTCACACCTGGGACATATGTGTGTCAGGCCCTTGTGAATGGAGAAGAGCATGAGAGCGAGGAGTACATTGTCCATGGCTGGACAGGGGGCTCAGGGCTGCATGTAGAGATGAAGGCGGAGAAGAAAGCTCTGCTGGTTGGGGAAACCCTCATAGTAAACTGTGTAGCCAAAGGCAGTGACTTGCTGGATCAACAATGGAAATATCCTGGAAAAATGgCGGATCGTGCTAAGATGACACTAAAGGAGAACAAGAAAGATCAGGAGATCTATTACACCCTGACTGTGTCTGATGCCAGAACTAAAGACAGTGGAAATTATGCCTGTTCCATCACTGACATTATGAGCAATGAGAGCCAAACCAAAGAGCTCACCATTACTGTCTATGAGAGGGAGTTTGTGTCTCTAGCTCCAATGTTTGCCCCTGTGGAGACAGCCAAACTGAATGATGTTCGCGAGTTCCAAGTGGACATTGAGGCTCTTCCTGCACCCAAGGTCACATGGCTGAAGGATGGCATTGTACTGGGTGATACTGCTGCAGAGTTTACTACCTCCCTTCGGACGATCAGTGAGACAAGgtaccAGAGCACTCTCGCTCTGATTAGAGCTAAGGCTGAGGACAGTGGCAACTACACTGTGCGAGCTCAGATAGGCAACCAGAGCGCCAGCCACTCGTTCAACCTTCAGGTCAAAGTTCCTGCTGTAATTGTGGACCTGATGGACCTGCACCATGGATCAGAAACAGGCCaggctgtggtgtgtgttgccGGAGGATCTCCCGTCCCTGAGGTGGAGTGGTACATctgtaaaaacattaaacaGTGTTCCAATGACTCAAACGAGTGGTCACCTCTTCAGACCAACACCACTGGCATCACCATTGATACACACATAGACCAGGACAACCAGTTGGAGAGTCAGGTGATCTTTGGACATCTGGAGAACACGCTGGCCGTGCGCTGTCTGGCACGGAACGAGATGGTCGCTGTGTCCCGTGAGATCAAACTGGTGGCCAATGGTCCGCACTCAGAGCTCACTGTGGCGGCTGCTGTTCTGGTGCTGTTGGTCATTGTCATCATCTCACTCATTGTGCTGGTCATTATCTGGAAACAGAAGCCACGTTATGAGATCAGGTGGCGGGTCATTGAGTCAGTCAGTCCAGATGGGCATGAGTACATCTACGTGGATCCCATGCAGCTGCCCTACGACACACGCTGGGAGTTTCCACGTGATGGCCTTGTCCTTGGCCGTATTCTGGGCTCGGGGGCCTTTGGGAAGGTGGTGGAAGGCACTGCATATGGACTCAGTCGTTCTCAGCCAGTAATGAAGGTCGCAGTGAAGATGCTCAAACCAACGGCTCGCTCCAGTGAGAAGCAAGCACTGATGTCAGAGCTGAAGATCATGACTCACCTGGGCCCCCACCTCAACATTGTTAACCTGCTGGGTGCATGCACCAAATcagGTCCTATCTATATCATTACCGAGTACTGTTTTTATGGAGACCTGGTGAACTACTTGCATAAGAACAGAGACACCTTCCTGAGCCGACAGGGTGAGAAGGGCAAGAAGGACCTGGACATCTTTGGCATCAATCCAGCTGATGAGAGCAGCAGAAGCTACGTGATCCTGTCTTTTGAGGAAAAAGGAGACTACATGGATATGAAGCAAGCAGACACAATGCAGTATGTCCCCATGTTGGAGAGGAGCAACGCCTCCAAGTACTTCGACCTCCAGAGAGATGATTATGATCACCCTCCCTCTCACAAACACATCAatgACAGTGAGGTAGAAAAGCTTCTCTCTGATGACTCAGAGCGCTTGACCACAATGGATCTTCTCAGCTTCACCTATCAAGTGGCCAGAGGGATGGAGTTCCTGGCCTCCAAAAATtgtgttcaCAGAGATTTGGCAGCTCGAAATGTCCTGTTGTCTCAGGGGAAGATTGTGAAGATCTGTGACTTTGGGCTGGCCAGGGACATCATGCATGACAACAACTATGTATCCAAAGGAAGTACCTTCCTACCAGTAAAATGGATGGCCCCTGAGAGCATCTTTGATAACCTCTACACCACTCTGAGTGACGTCTGGTCTTACGGCATTTTACTGTGGGAGATCTTTTCTCTGGgtggGACCCCTTATCCTGGCATGGTTGTGGACTCCAGCTTCTATAACAAGATCAAGAGTGGCTACAGGATGGCCAAACCTGAGCACGCCTCCAGTGATGTTTATGAGCTTATGGTGAAGTGCTGGAACAATGAGCCAGAGAAGAGACCCTCGTTCCACAGTCTGAGTGAGAGTGTGGCCACCCTGCTGCCATGCGGATACAAGAGGAGCTATGAGCGTGTAAATAATGACTTCCTGAAGAGCGACCACCCGGCGGTGACCCGCGTGCAGTGTGTGCAGAGCGATGAGACCTATTTGGGTGTGGCCTATAAGAACCAGTGCAAGATGAGGGAGCGTGAAAGCGGCTTCGAAGAGCAGAGACTGAGCTCAGACAGTGGCTACATCATCCCTCTGCCTGATCTTGACCCCCTTTCCGACGAAGAATACACCAAAAGGAACCGCCATAGCTCTCAGACATCTGAGGAGAGCGCTATAGAGACAGGCTCGAGCAGCTCCACCCTTCCCAAGCGGGAAGTAGAGACTCTGGAGGACATAACACTGCTGGACGAGATGTGCCTGGACTCAGGGGATCTGGTGGAGGACAGCTTCCTGTGAGAGTGAGACATAGAgctggaaagagagaaagagaggatgagagagaccCTGTTTAGCAATTCATCCAaaagggaggaggagagaagggCTAAAATGCAAGCATCAGTACAAGAACTCGTCTGAATAGCCCTTTTCTATCTCCCACCTGTTCTCTGAACTCTTGCTCCCCTGTATCATCCACCTGCCCCTAGAATCCTCAGAGGAAAAAAGCCTCTTCACTGCCTGGATGTCCTGCGAAGGTCATCTATAATTAGAGACAGCGTCCTCTACTGGCTCGGAGGACGGTCCGGTAAAAGACTGTATGTGTACTCAAACTATGAGGCATAAGgaaataatacagaatattaacattttgtaTAGAACTTTATTTTGTTGGGCATTCAGAACAGTGAATTAAGCAGGAACCTGAACGTACTATTGTATACTCCATAACCAGTTGATTTACAAATGAGTCAGTCTGAGCTTTCAATGACCACTACACCTGAACAACTGAACTGACCCGACGCAGTTTCTTTCCATTCACATTCCATCCACATCCATTTCCCAGCATATTGCAttaaaaagcacaaactttGGACTAAATATATAGATCCTGTACCTGATCATACAGTATATCGTCTGTGACGCAATAAGTGCAgcagtttgaatttttttttttttgtttgtttttttttgtttgttttttacatattactgaatataaatgtgtaatattttgtgAATATTGGGGAGGGAAGGGAAAAGTTTTTATGTTCCTAAATGAAGAAAACAGCAATAATACTTTGACTTTTGTAGGTCACACAAACCTCACACTATTGCAATTTTGACACATTACAGTAAAACCGTACCAAAGCATGGACCAAAGATTAAACTGTTCAATGTGTCAAGCAGAAGATATGGCAATATATCAAGACTTCTACCAGTGTTATAGTGCACAGGAACTGTGTTTTTACCCTGTGGCAGTGATGAACTAATCACTTCAGTGAGAGGATAAACCTTGTGGTAGCTTAATTGGCCTTTAAAGGTCAAATGTTGACAATAAGCTGGAACATTTTGATGCTGTGTATAACATATTGTAACATGTTCATCTATTTACTATTTGAATAATCTGAACCTAATGACATATTATATGGGCTGGTTTAGATGTTTTACCCAAAGATGTCTTTTCATCCTTTAAGCTTTCTTTGAAATCTTAAGACCTGTAGCACAATAACTGTAGTGATATTGTAGAGAGAGGTATAGAGAGGCAGAGCAAAACATCTTAGCAAGGGAAAACATCTCGAATATAGTCGtctaatatttcctattataagattacaataacccaaacattattaaacctatttctagacattttctACTAATTTTAAGgtttaaattgtcttattcttttggcagatcattttgcttcttgcTAGACATacataaatgcttaaaattagaaaaatgaaaatgtgaaattagtAAACAAAagatgtctagaaataggtgtAATACTCTTATTTGTTTTAGTGTAATCTTATAACACAatatattagataaatttgactatattcaagatattttcacctgatgtcatttttttgcattgaaatGATTTGtggttttcatttaatattactaatattgCAAAAGATGATTATCCCCAGACATTATTGACCTTCTGTTCTGTTCCTGAGCACTGATGCTGGACACTATGGACCGTAAAACCCTGGTATTCTaggtttttcatttaaaaactataaaaaaactatataaactGAAACACAGGTATATCATCAAATGTCCAGCTTCAGTGCATATAACGTCTAAAGCCGAGCTTTCCATCTCACCTATATTGTGTACAGTCGTCCTGAAGCATGGTAGAGAGTCTTTGTGTAGCTAGTTTGATGTTATACATCACTGCACGGATTAAATGGGTTTTCAATGTAGAGTTTATCATCCAGCAATCCACTGCCTCCCTCTGAGTGTATACCCACTGTGATCTACTCAATGGGCacgaagaagaaaaaaaaaactgttgcacTTTTTAGACccttcttttgttgtttttatctgtCATTGTATGTTTGTTTGAAGAGTTTATATGATGAGCAAATACATTTCGTGAGATTTATTTGGCTTTAAATGCCTCCAGTTTCTGTAGACAGCAGACTGAGTGTTGTACAGGAAGAGATGGTTAATAGAAGAGAGGTATGAATTATACTCCATGGTACAGTATGTGTAATAATAGGTAGTTACTCCCAGTACAAGATGTTATCCTCCTGTCTTATTATGCGTTATGTCTATGTCCATTCAGATGatttatatttcaataaatgagatttaataatgtga

Function

GO: NA

KEGG:

id description
K04363 PDGFRA, CD140A; platelet-derived growth factor receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342751 lncRNA upstream 43726 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 237308 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 347760 3383677 ~ 3383882 (+) True G289164
TU342502 lncRNA upstream 361788 3364238 ~ 3369854 (+) False G289145
TU342784 lncRNA downstream 89684 3843115 ~ 3844679 (+) True G289378
TU342935 lncRNA downstream 188843 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 194765 3948196 ~ 3948458 (+) True G289517
TU342945 lncRNA downstream 231316 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 293778 4047209 ~ 4055985 (+) True G289533
XM_026946969.2 mRNA upstream 11154 3718106 ~ 3720488 (+) True gsx2
XM_026946854.2 mRNA upstream 146637 3554737 ~ 3585005 (+) True fip1l1a
XM_026946855.2 mRNA upstream 146637 3554737 ~ 3585005 (+) False fip1l1a
XM_026946856.2 mRNA upstream 146637 3554737 ~ 3585005 (+) False fip1l1a
XM_026946820.2 mRNA upstream 328967 3399115 ~ 3402675 (+) True rasl11b
XM_026946915.2 mRNA downstream 27959 3781390 ~ 3808749 (+) True kita
XM_026946916.2 mRNA downstream 27959 3781390 ~ 3808749 (+) False kita
XM_026946917.2 mRNA downstream 27959 3781390 ~ 3808749 (+) False kita
XM_034313897.1 mRNA downstream 125391 3878822 ~ 3885661 (+) True LOC117599795
XM_026946996.2 mRNA downstream 143584 3897015 ~ 3901866 (+) False mgst3a
XR_003404754.1 other upstream 363870 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 366240 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1235590 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1590005 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1722836 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 190064 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 234621 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 310204 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 574040 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 575401 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile