RNA id: XM_026946939.2


Basic Information

Item Value
RNA id XM_026946939.2
length 2725
RNA type mRNA
GC content 0.41
exon number 11
gene id pla2g7
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2162431 ~ 2181156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTCAggaagtgacgtcaaatcaacatggctgcgcacacagcatcagcagtCGCGCTTCTTCCCATTACATCCATACACAGATTAACGTTTGTTAAATCGAAACACTGACTAGACAGTTCACTAGTTTGAGGAGGAACatatacatcatcatcatcatcatcatcatcacagttagctggttagcttgttgctaacagaAGACGCACATGCAGGCGTCCATGCTTTTCCCCACTTTATAGCTCGGATGCGCGGAGGTGGAAAATGACGTCATTCCGAGCGCCGCCGTCCCACTTCCGAGAAAAGCCGAAAGCAGCAGACAGTCCGTCATGCTGAAGTTGTGTAAAACATGCAAGGTGGATCCACCTGCTCGCTCTTTCACTGTGCCGCTGCCGGCTTCCCGTCCACACCGACGTGTGCTGAGCAGAAGCCGGAAGTCTGAAGATAAGGGGCTGTAGAACTGgctggatcaccagcagctgAGACTGTAGtcctctttcctttcctttcacacaaacactgatcaAGAAGATCCACGACTGGCTTCATTTCAGCAGCAGAAAATAACGTCGGGCAGATTTGAGGAAGTGGAACCACATAAGTTTGCTTAAATGGGAAATTCTGTGGGGCAGAACAGCTTGGGAATTCCTCGAGGAAAAGGACCACACCAGGTGGGATGCACGGACTTAATGGTGGGGCACACCATACAGGGAACCTTCTTCAGACTTTACTATCCGTGCCAAGCTCAAGAGGGTTCAGATGAGCCAGCCTGGATCCCATGCAGAGAATATTTCAATGGCCTTGCTgacttcatgaaaatgagccgAGCACTGAGTGAAAAAATTTTTAAGTACCTCTTTGGGTCTTACAAAATCCCAGCAGCATGGAACGCCTCTTTTAAAACGGATGGAAAATACCCAATAATTATTTTCTCCCATGGTCTGGGAGCATTCAGGACACTGTATTCAGCAATATGTGTCGAGTTGGCCTCCCAGGGCTTTATTGTTGCTGCAGTGGAACACAGAGATGAATCAGCTTCAGCAACCTTCTACTACAAAGAGaagagtgaaacaaaacaaggcCATCACACATCACGGGAAACATTCCGGCCTGTGTCGGATAATTTGGTGGAAGAGTGGATGTACTACAGATCACTAAAAACAGGCGAGAGTGAATTCCTTCTAAGAAACAATCAAGTGAAACAAAGGGCAGATGAGTGCATCAGAGCTTTGGATATACTTACCGACATCAATTCAGGAAAGTCTGTGGAAAATATCTTACTGTCTGAATTTGACTGGTCAAAATTGAAGAACTGTATGGACTTGTGCAGAATAGCAGTCATGGGCCATTCCTTTGGTGGGGCCACAGTGATCGAGTGTTTGTGTAAGGAAGTCAAATTCAAGTGTGGCATCGCGTTGGACACGTGGATGTTTCCCCTTGATGAGGAAATCTTTCCAAGTGTGAAACAgccaatttttttcattaactcCGAGAAGTTCCAGTGGGCCGGGAATATTGTTCGCATGAAGAAATTAGATTCTGCCGTCATTCCAAGAAAAATGATCACCATCATGGGAGCTGTGCATCAGAGCTTCCCAGATTTTACCTTTCTCACAGGTACCTGGACTGGGAAGATCCTGAAGCTGAAGGGAGAAATCGATCCTCACATAGCAATGGATTTGTGCAACAGAGCCTCGTTAGCATTCCTTCAACATCACTTGTCTCTGGAGAGAGACTTCAATCAGTGGGCTCATTTAATTGATGGAAAAGATGATCACCTGATTCCAGGCACCAACATCACTCTGCTTCAGTCCTCcatctaatcatttattaaaaaagaaaaagaaaatacataatGACAGTTTGTAATCTTCATATTTCTGTTGCCGTGCAGCAAACACAGAGATAAAGGTATAATCCCAACATATTATATTGTTGAAccaaatttaatttgaatcgTATAGCTGAATTTTGACTGCGGTGTATGAAAATCCACCAGGTTGGACCACATGaatcatgaatattttaaataagggCATTATTTAATTAGAATTGAGTGAAGTACAGACTCTTATATGGTAAGCGGTTAAAAGAGGTTTAACAAACAGCTTGCATGGTTCTGAACAAGATCAGAGTATTTCCTGAAGTTGTACATTTTACTGTCCCAGCTGGTCTTGTGCACTGTTTCTACAGCTATGTTAAACATTATTAATCTGTTATAATAAGTAACATATTTTCCCCACTGAATATCTGTGACACTGCTGTTACTGCAAAATAAACAGTTCACAGTTAGTTCACTGAAGTAATCAGACAGTCTGAAGATTCAGCTTTAAATGATCTATAATGTCACCTGTGTAAAGCCTTTAAACTATAGAATGCCTACagtcagaataaaaatattttaacttgtcatattttatattttaaacaatttataaattaacccacatattttaatttgaagtgtttttttcacttgtatggaaataaaacatgatccTCAGATGCAAATTCactacaggaaactaatcattGTAACACTGACACATGAAAAGGCTGACTAATAATTAAAGCTATTTCATGCTAGAATTCtttgtataatttaatattaaattttacattaatgTCTATTTTACATATGgtttacatttactttctttttattcattttactcATGTCTTTTGAAAGGAAATAACTGGGCAATAAAAGATGTTTGTGAAATTca

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580150.1 lncRNA upstream 11193 2147215 ~ 2151238 (+) True LOC117599781
TU341394 lncRNA upstream 88550 2027343 ~ 2073881 (+) False G288225
TU341415 lncRNA upstream 91155 2071034 ~ 2071276 (+) True G288242
TU341398 lncRNA upstream 133725 2026869 ~ 2028706 (+) True G288225
TU341372 lncRNA upstream 166752 1995460 ~ 1995679 (+) True G288207
TU341667 lncRNA downstream 34421 2215577 ~ 2218638 (+) True G288461
TU341720 lncRNA downstream 144502 2325658 ~ 2326289 (+) True G288512
TU341802 lncRNA downstream 267266 2448422 ~ 2453374 (+) True G288581
TU341932 lncRNA downstream 325413 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA downstream 325413 2506569 ~ 2510414 (+) False G288694
XM_034313859.1 mRNA upstream 3737 2151234 ~ 2158694 (+) True adgrf3b
XM_026946812.2 mRNA upstream 20250 2133158 ~ 2142181 (+) True LOC113546780
XM_034313448.1 mRNA upstream 31160 2122561 ~ 2131271 (+) True LOC117599673
XM_034313449.1 mRNA upstream 31160 2124988 ~ 2131271 (+) False LOC117599673
XM_026946948.2 mRNA upstream 42514 2092475 ~ 2119917 (+) True tnfrsf21
XM_026946983.2 mRNA downstream 8603 2189759 ~ 2212201 (+) True tdrd6
XM_026946863.2 mRNA downstream 154914 2336070 ~ 2354598 (+) False fzd3a
XM_026946862.2 mRNA downstream 154915 2336071 ~ 2354598 (+) True fzd3a
XM_026947002.2 mRNA downstream 255542 2436698 ~ 2439040 (+) True lft1
XM_026946966.2 mRNA downstream 273637 2454793 ~ 2474603 (+) True kif26bb
XR_004580079.1 other upstream 20794 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 153625 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 803069 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 897799 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 918759 1243057 ~ 1243672 (+) True G287892
TU341918 other downstream 308521 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1184122 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1186492 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1762339 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1806896 3988052 ~ 3988123 (+) True trnad-guc_14

Expression Profile