RNA id: XM_026946957.2


Basic Information

Item Value
RNA id XM_026946957.2
length 3773
RNA type mRNA
GC content 0.44
exon number 22
gene id hook1
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4024682 ~ 4045273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGACGCAGCGGAAAAGGGAAGCGCACTGTTGACAGGTGGAcggaaatatatttatatatttatatgtgttcGACCTGCGACGGTGGGAGAGATGGATTTGAACAAAACGGTGTTATGTGAGAGCCTTATTATTTGGCTGCAGACCTTTAACACTGCAGCACCATGCAAGACCGTGGAGGATCTGACTACAGGTGCAGCTATGGCACAAGCTCTGCATCAGATAGATCCGTCCTGGTTCAATGACAGCTGGTTGACGCGTATTAAGGAAGATGTTGGAGAAAACCTGAGACTCAAGTTGAACAACCTTAAAAAGATCTTGCAGATGATTGTTGATTACTATAATGAGGTCCTGAATCAGCAGACGTCAGGCTTCCCCCTGCCTGATGTGGTGCGCGTGGCCGAACTCTCTGACCCCCTGGAGCTCGGGCGCCTCCTGCAACTCATCCTCGGCTGTGCTGTCAAATGTGATAGGAAACAAGAGTATATCCAGATCATAATGACACTGGAGGAATCTGTGCAGCATGTAGTCATGACAGCCATTCAGGAGCTAATGAGCAGAGAGTCCTTGGCCCAATTAGGGACCGAGCCACAGGGGGATGTAGAACAGCAGCTGAAGAAAGCTCTGGAGGACTTGACCGAGCTGATGGCAGAGAAAGATGAACTAGCTCAACGCTGCCAAGAGCTCGACATCCAGGTAGCAATTCTGCAGGAAGAGCGGAATAGCCTCTTAGCGGAGAACGATGTCCTGACGGATCGAACCAGTCAATTGGATTCCTTTGACGATCCCAGCACTCCATCAGGGAAGAAACACAGTCAGCTCCAGCTGCAGCTAGAACAACTCCAAGAGGAGAACTTCAGACTGGAGGCGGCTAAAGACGACTACCGTATTCACTGTGAGGAGCTGGAGAAGCAGCTGGTGGAGCTCCAGCACCGTAATGATGAGCTCACCAGCCTGGCCGAGGAGTCTCGCTCGCTGAAGGACGAGCTCGACATACTGAGgagctgcTCTGACCGGGCAGTGAAGCTTGAAGCCTCTGTGGAAACATACAGGAAGAAGCTGGAGGATCTTGGTGACCTGAGACGACAGGTGAAGGCTCTGGAAGAGAAGAACATGACTTACATGCACAACACTGTCAGTCTCGAGGAGGAGCTCCGCAAAGCCAACGCTGCACGCGCCCAGCTAGAAACTTACAAGAGACAGgtCCAGGAGCTTCACAGGAAGTTGTCTGAAGAGACTCGCAGAGCCGACAATCTGGCCTTCGAGATGAAGAAGTTTGAGGAAAAGCATGAAGCCTTACTGAAGGAGAAAGAGAGGATCATCATTGAGCGAGACTCTTTAAGAGAGACCAATGAGGAGCTTCGTTGTACACAGGCTCAACAAGACCAGCTTCTGCAAGCTGaaatgtttaaaactgGAAGTCCGACCCGGGACAACTTGGCAGCTGAGATGTTGCCCATCGAGTACAGagAGAAGTTCATTCGTTTGCAGCATGAGAATAAGATGCTGCGAGTGCAGCAGGAGGACTCTGAGAACGAGCGTATTGCTGAGCTCCAGATGCAGCTGGAGGAGGCACGGCGTTCACACAGTGAGCTGGACACTGAGAACAGGTTGAACAGAGAGAGCATCACTGAGCTGCAGCAGCAGGTTGAAGATTTGCAGAAAGCCCTCCAGACCCAGGGAGCCAAACCTGAGGATTCCCATCTGAAGAGGAAACTGGATGCTCATATGGTGCAACTGAATGAAGCACAAGATGAGATCATGAAGAAGAAGGAGCTACTGGAGGACCTACAGCCAGATGTGTCTCAAACCTCACTGAAGGTGGATGAACTGATGGCTGCTCTGAAGAAGAAGGACGATGACATGCGAGCGATGGAGGACAGATACAAAATGTATCTGGAGAAAGCACGCAATgTGATCCGAGCACTGGACCCAAAGTTGAACCCAGCCTCAGCTGAGATCCAGTCCCTGAAGAACCAGCTgtcagagaaggagaagagaatAATCGCTCTAGAGagagagtgtgagcaGGCTAAGCTGAGAGAGTATGAGGAGAAACTGATTGTGACTGCATGGTACAATAAGAGCCTGAATTTTCATAAGTTGGCGATTGAGTCTCGTCTGAGCGGGTGCTCGAACTCTCTGGTGCCACCTGGCCAGTCCTTCCTAGCCCAGCAGCGTCAGGTGACCAACGCACGACGCGCCTTGTCAGTCAACGTGTCTGCAAGCTCCTCCAAGTGATGACTCGACCCCCACTACACCTGGTTTTCCCTTTTCTCAAGTGCACACTTAAGTGACCTTAAACACCTTGAACTCCTAAGTAAAGGGACAAGCATGCCATAATGTGAACATTAGCACTTACAAACTCCACATATATACTCAAACAATCAAGCAAGGATTTAACACTTCACAAAAACAATACTCACTCAAGCACAGTAATTCAATTTTAAAGACTATTATACACTTTAATTTACCATGCACACAACAGACTACAGCCTCTGCAATTAGTTACGTAAGACAAGCTGCAACAGCTGTATTTATTACTGGCTTGatatctatattattatttcaacaGTGACATTTGTGAAAGACAAATTCAGAGAAAGATGTATCATGATATTGTCCTTAGTATGCGTTTAGGATGCATGACGAAGGCTAAACTGGACTTCCAGTAGTATTCTATGCAGTCAGGTAATGTGTActattataaatatgaatactACTATTGCCCTGAATGTATATAAAGAGACGTGTGTTTATTGATATTTCATTTAACCTCTCAGCTTCCATGCATGTTCACAAAATCAGCTACATTGAATGATATGGATAAAGCATCAGGAAAAACGCATATATGGTGCTGGACACcaaatgctctttttttttctactacaAAATGACTACTTTTCTTATAATTGAATACAAAAAGTAAACAATTACCAATCACAAAAGTTTAAATGTAGGTGCTACAGACAGTCTTTAATCAACTAGAACAAGCTGTCTGTATAATTTAACgtcaataataatttatttaatacagaaattgaCTGTGATTGGACTCGTGCATGCTCTTATGAACAGCAGCAGAACCTTGTTGTCTCTTGTATATTTTATCTGGCTTTAATGTGTAAAAGCATCAGATATCAGGATTAAATCACCAGCTCATGGTCATGGCATCCCAGCCCAATCGTCCTATTATAGGGTGAAATGCTGTGACCTTTTTTCTGATTGCTTTCTTTTTCACCAACtggcatttatttatggaaacCATTCGTGACCAATAAATGATCTGTTGCTGCAGTATAGATTTAGAAAGACTGTCAGAGGGTCAGAATAATTTGGGATTGTATCATACAAAGGTGATTAGTTTTTGTTGGAAACTATTTAGCCAGTGTTCCCCAACCCAGATGGTTCACACTTTTGCTCCCAGCAATCAAGAACACCTGGTTAAGCGCAAAAAGGTTACCTGAGGCTGTCGCTCAACACTGGATTGGTAAACACTACTTTTGGCTCAGTTTACACTCTTACTGGTTAGTCAAGTTTCTTAAATAGAGTCATAATCTCTAATTTACtttctattttaattattattgtaatgaaTATAGGATTTTTATCCTTTACTGGGAAATATGATGAAATTGTTTTGAATGATAAATACAGATACTTATGTAAAATGCTAAAAGAGATAGGCTTTTAAAGTTGTGTATGTCATTACTGAGTGTTATATGTTTTTGTCAATCACAAAGcttaataaagataaaaatgaatataaataa

Function

GO:

id name namespace
GO:0007032 endosome organization biological_process
GO:0007040 lysosome organization biological_process
GO:0015031 protein transport biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0045022 early endosome to late endosome transport biological_process
GO:0005874 microtubule cellular_component
GO:0070695 FHF complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342935 lncRNA upstream 50667 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA upstream 76224 3948196 ~ 3948458 (+) True G289517
TU342784 lncRNA upstream 180003 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 285468 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 336766 3623064 ~ 3687916 (+) True G289351
TU342978 lncRNA downstream 1936 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 9184 4054457 ~ 4069715 (+) False G289531
TU342967 lncRNA downstream 9184 4054457 ~ 4070367 (+) True G289531
TU342971 lncRNA downstream 9184 4054457 ~ 4069715 (+) False G289531
TU342972 lncRNA downstream 9184 4054457 ~ 4069715 (+) False G289531
XM_026946977.2 mRNA upstream 8132 3991667 ~ 4016550 (+) True pfas
XM_026946901.2 mRNA upstream 41988 3943497 ~ 3982694 (+) True ipo13
XM_026946902.2 mRNA upstream 47942 3943494 ~ 3976740 (+) False ipo13
XM_034313657.1 mRNA upstream 107602 3905694 ~ 3917080 (+) True LOC113546823
XM_026944441.2 mRNA downstream 56396 4101669 ~ 4115455 (+) True ppat
XM_026944445.2 mRNA downstream 78785 4124058 ~ 4137561 (+) True aasdh
XM_026944446.2 mRNA downstream 82028 4127301 ~ 4137561 (+) False aasdh
XM_034313506.1 mRNA downstream 131258 4176531 ~ 4196440 (+) False cep135
XM_034313504.1 mRNA downstream 131260 4176533 ~ 4196439 (+) True cep135
trnad-guc_14 other upstream 36559 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 44897 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 656910 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 659280 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1528630 2489677 ~ 2496052 (+) True cnstb
TU342966 other downstream 18362 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 282198 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 283559 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 288285 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 292630 4337903 ~ 4337974 (+) True trnad-guc_19

Expression Profile