RNA id: XM_026946959.2


Basic Information

Item Value
RNA id XM_026946959.2
length 2952
RNA type mRNA
GC content 0.45
exon number 2
gene id paqr8
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2640280 ~ 2644268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCTCAGCTAGTAGCTCGCCTCACCAGTTCAGCAGTGGACTTGTCTGAGGCTGAGTCCCTCCATCGCTGGGGATAATGTGTCTACACTTACAATCACTGGACATAACCCAGAAAGGAAAAACTATTGAAGGGTGAACAGTGGCTCTCCAACGGTGTCAGGACACACAGcTTATCACTATGTCAAGTGGAGTTTTAGGCCGTCTGAGCACACTGACACTCAACATTAAGCAGCTAGTTGGCCTGCCTTGTCTTTCCCCCTCCCTTTGTTCCTTGCCATCCCCTCAGGCCACCGTGGGAGCCTCACACGTGCCCGGCCTATTCCGTGAGCCCTACATCCATTCCGGCTACCGTCCTGTAGGCCAGCCATGGCACTACTATGCACTCAGCCTCTTTCAAAGCCACAATGAGTTGCTGAACGTCTGGTCACACCTTCTAGCTGTACCTGCTGTGCTGCTACGCTTCTGGCTCTTTGCCGCCACAAGAAGCCTGACTCTAGATGCCTCATCGCTGCCCCTCTGCCTCTACATCCTTTCAGCTCTGACCTACCTCACCTGTAGCACGCTAGCCCACTTGCTTCAGTCTCACTCAGAGCTCTCCCACTACTCCCTCTTCTTCCTGGATTATGTCGGCGTGGCTGTGTATCAGTATGGATCGGCGCTGGCTCATTATTTCTACTGCGCTGAGGAGGAATGGAGGCAGAGCCTGGTGGGGGTACTGTTCCTGCCTGGCGCTGCTCTACTGGGCTGGTTATCGTGTGCCAGCTGCTGCTTCGCCAAGTTGCACTATCGCCGTCCATACCCACTGCGCAGGAAGATCTTCCAGATTGTGCCCACTAGCATGGCATACATGTTGGACATCAGCCCTGTGGCACTCCGACTAGCCACGAGACCCTGCCATGAGCCGGTGCTGGTGCTGCACACCCTGCAAGTGGCCTTCTTCCTGATGGCTGCCTTCTTCTTCTCGTGCCCGGTGCCTGAGCGCTTCTTCCCAGGGAAGTGTGATATTGTAGGTCATGGGCACCAGATCTTTCACATCTTCCTGGTCATGTGCACCATGTGCCAGATGGAGGCTGTTTTTAAGGACTTCTTGGTGCAGAGGAGCTCGGTAGTGCAGGTGCATGGAGAGTGGAGCATCTGGCTGGCCGCAGGCTCTTTCTTTGTCCTGGTGCTGTGCAGTATGCTGACGGCAGCTCGGATGAGGCTGGGTGTCCAAAGGCAGCTGCaagaagaaagaatgaagaatgaatgagGATAAATTTGGGTCTAGGGTGTTTACCTCCAGTTCTGGAGGGCTACCGAACTGTGCCgttctctaacacacaccagTTTCAGCATACAAAGGATATGAGTGAACATTAATAATGTGACGCTCTTTTGATAATTGGTAAAATATTAATTCTCAGAACATAACAAAGTCCCTTtttgagtattttattttattgggatAGTGTGAAAGTTATGCACAACAAGAGTATGAATATGCCTTGTGATAACCTGTCATTGAGAACAGATCTATACAAGGCCATGCGTGGCTGTATGTTGTGACCTTAGTATTAGAATGTGCTATCTGGGTTGAGAATGAATGCGAACCATAACATGTGTTTGCATATGTTTCAAATGCTTACATGTGTTTGATCCAAGAATGGGCACATCACATTTCACTGTACAAGTACTTGATTATACAAAACTGACTGAATAAAttatacgctatatggccaaaagtatgaagacacctgaccatcacacccatatatggttcatccctaaactgttgccacaaaattgaaAATGCAGAATTGTAAAGAAAGTCTTTGGATGCTGtatcattacagtttcccttcactggaactaagaggtccaaacctgttccagcatgacaatgcccctgtgcacaaagcaagctccatgaagacatggacAAAAGACATGAGAAAGAAATGCTCGCCTGatatcagtgtctgatctcactaatgctcacgtggctgaatgaacacaaatccccaaatTCACAcaccaaaatctagtggaaagccttcccagaagagtggagcttattataacagcaaagggggaataaatctggaatgagatgtccaacaaacacatatggtgtgtgacggtcaggtgtacacatacTTTCTGCCATATTGTGTATGTAACGTATCATTATTCAATGACAATTATGTTATGTGGACTCACATAAGGCCATTGTGTACTGAAAGGTCTTTCAAAAGTAATGTGCCTAGCACTGAATGCACAAGAGCCCCAATAATAATCAGTTTCAGTTACTTTTCGTCAGTTTACATAATTTAATGTAGCTGCCTCACATATAGACCAGTCTGTATAATCTTTTGCTTAGCCAATGCTCCTTGCATTATGCATTTATGGGTCTGTGTGGCCTATTTTCTACTAATCTTTTTCAGCCTGAGCCCCATTAATCACTTAAAAAGAACAAAGGAATAAAGTTAGATTTGGCTTTATTGCTATCAGGAGGAGGAATGTGTGAACAAAGGAGTTTATTTTGTGAGACTGGTTTTTACCAAAGAGCCTGTCAGATGCTGGCTCGAGAAATTCCCAGATCAGATTAGTTAATCAGATTGACCTCAGAACCTCAAGAATGTTCCCCTGCTCTCAGTACAACTGTTAGCAGATGCAGGAAACATATCCATCAAAATATGTGTAACCAGGTTTGCTGGTGGTTTGAATGTCACATGATTTGTTTGTAAGTTTGTTCTTTATTTCTAGttataatgtactgtatttaattaaaagaattGTTATTACCTCAGCCAGTTGTTAAAGGAAGAAAGCTATATTAAATTCTTAGttataatgtactgtattcAGTTTAAACGATTGTTATTACCTCAGCCAGGtggtaaagaaagaaagctatATTCACTCTGGGGGGAAAAGTGTGTTAtccatatttgttttttgaCTGACTGTCA

Function

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341993 lncRNA upstream 11962 2627758 ~ 2628318 (+) True G288740
TU341983 lncRNA upstream 31907 2581309 ~ 2608373 (+) True G288734
TU341932 lncRNA upstream 124905 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA upstream 129866 2506569 ~ 2510414 (+) False G288694
TU341802 lncRNA upstream 186906 2448422 ~ 2453374 (+) True G288581
TU342050 lncRNA downstream 120002 2764270 ~ 2765055 (+) True G288789
TU342114 lncRNA downstream 225328 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA downstream 226094 2870362 ~ 2870666 (+) True G288836
TU342119 lncRNA downstream 334065 2978333 ~ 2980205 (+) True G288839
TU342216 lncRNA downstream 547839 3192107 ~ 3193930 (+) True G288927
XM_026946998.2 mRNA upstream 21400 2612201 ~ 2618880 (+) False stmn4
XM_026947000.2 mRNA upstream 21400 2612321 ~ 2618880 (+) False stmn4
XM_026946999.2 mRNA upstream 21400 2612500 ~ 2618880 (+) True stmn4
XM_026946818.2 mRNA upstream 144427 2485036 ~ 2495853 (+) False cnstb
XM_026946825.2 mRNA downstream 1805 2646073 ~ 2654271 (+) True LOC113546789
XM_026946828.2 mRNA downstream 12501 2656769 ~ 2664965 (+) True znf395b
XM_034313454.1 mRNA downstream 12925 2657193 ~ 2664965 (+) False znf395b
XM_026946936.2 mRNA downstream 40105 2684373 ~ 2702470 (+) False si:ch211-63o20.7
XM_026946935.2 mRNA downstream 40105 2684373 ~ 2694594 (+) True si:ch211-63o20.7
TU341918 other upstream 144228 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 498643 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 631474 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1280918 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1375648 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 721010 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 723380 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1299227 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1343784 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 1419367 4063635 ~ 4069715 (+) False G289531

Expression Profile